Locus 8916

Sequence ID 3R_DroMel_CAF1
Location 23,923,739 – 23,923,834
Length 95
Max. P 0.636323
window14302

overview

Window 2

Location 23,923,739 – 23,923,834
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.90
Mean single sequence MFE -11.98
Consensus MFE -7.12
Energy contribution -7.78
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.59
SVM decision value 0.21
SVM RNA-class probability 0.636323
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23923739 95 - 27905053
AUAGUUAUCCGCAUGUAAAUACAUGGUAAACAAGUCAACAAUCUGUUUACCAGAGAA---------------A----AAAAUAACCCAAAUUAAAUCCUUGGCCACAACAACAC
...(((((....((((....))))((((((((..(.....)..))))))))......---------------.----...)))))((((.........))))............ ( -12.70)
>DroSec_CAF1 125376 96 - 1
AUAGUUAUCCGCAUGUAAAUACAUGGUAAACAAUUCAACAAUCUGUUUACCAGAGAA---------------A---AAAAAUAACCCAAAUUAAAUCCUUGGCCACAACAACAC
...(((((....((((....))))((((((((...........))))))))......---------------.---....)))))((((.........))))............ ( -12.20)
>DroEre_CAF1 128820 99 - 1
AUAGUUAUCCGCAUGUAAAUCCAUGGUAAACAAGUCAACAAUCUGUUUACCAGAAAA---------------AAAAGAAAAUAACCCAAAUUAAAUCCUUGGCCACAACAACAC
...(((((...............(((((((((..(.....)..))))))))).....---------------........)))))((((.........))))............ ( -12.09)
>DroYak_CAF1 132663 114 - 1
AUAGUUAUCCGCAUGUAAAUACAUGGUAAACAAGUCAACAAUCUGUUUACCAGAAAACAAAACAAAAACCUAAAAAAAAAAUCACCCAAAUUAAAUCCUUGGCCACAACAACAC
...(((.((...((((....))))((((((((..(.....)..)))))))).)).)))...........................((((.........))))............ ( -13.00)
>DroAna_CAF1 133470 88 - 1
AUAGUUAUCCGCAUGUAAAUACAUGGUAAACAAGUAAACGAUCUGUUUACA--------------------------AAAAAAGCCCAAAUUAAAUCCUUGGCCACAACUGGAA
.......(((.(((((....)))))(((((((..(.....)..))))))).--------------------------......(.((((.........)))).)......))). ( -14.90)
>DroPer_CAF1 136593 80 - 1
AUAGUUAUCCGCAUGUAAAUCCAUGAUAAAC--------AAUCUGUUUACG--------------------------AAAAAAGUCCAAAUUAAAUCCUUUGCCACAACACGGC
.(((((.....((((......)))).(((((--------.....)))))..--------------------------...........)))))........(((.......))) (  -7.00)
>consensus
AUAGUUAUCCGCAUGUAAAUACAUGGUAAACAAGUCAACAAUCUGUUUACCAGA_AA_______________A____AAAAUAACCCAAAUUAAAUCCUUGGCCACAACAACAC
...(((....(((((......)))((((((((...........))))))))..................................................))...)))..... ( -7.12 =  -7.78 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:41 2006