| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,909,072 – 23,909,189 |
| Length | 117 |
| Max. P | 0.894745 |
| Location | 23,909,072 – 23,909,189 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -59.28 |
| Consensus MFE | -31.93 |
| Energy contribution | -33.43 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23909072 117 - 27905053 CCAGCAGCCCGUGGCGGCCAGCUGCUGUCCGUAGGCGGCGGCGG---CAGCAGCCGCGCCCACUCCAUACGGGAAACCGGCGGCAGCAGCGGCGGCACUGUUCAGGGCCUGGGUGGCGAU ...((.(((((.(((.(((.(((((((.((((.((.((((.(((---(....))))))))....))...(((....)))))))))))))))))....((....)).)))))))).))... ( -65.20) >DroVir_CAF1 105307 114 - 1 CCAGCACCCAGUGGCGGCCAACUGCUGCCCAUAAGCGGCAGCGGCGGCAGCAGCAGCGCUCACGCCAUACGGAAAGCC------AGCGGCAGCGGCGCUGUUCAAAGCCUGACUGGCCAU .((((.((..(((((((((..(((((((((....).)))))))).)))(((......)))..))))))..))...(((------.((....)))))))))......(((.....)))... ( -49.90) >DroGri_CAF1 76028 120 - 1 CCAGCACCCAGUGGCUGCCAGCUGCUGACCAUAUGCGGCAGCUGCGGCUGCGGCAGCACUAACGCCGUACGGAAAACCGGCAGCAGCGGCAGCAGCGCUAUUCAAUGCCUGGCUGGCCAU (((((.....((.((((((.(((((((.((...((((((.(((((....))))).(......))))))).((....))))))))))))))))).))((........))...))))).... ( -57.40) >DroWil_CAF1 145813 120 - 1 CCAGCAGCCAGUGGCGGCCAAUUGCUGGCCAUAGGCGGCAGCAGCUGCAGCAGCAGCGCCCACGCCAUACGGAUAUCCGGCGGCAGCGGCUGCUGCAUUGCUAAGGGCUUGACUGGCAAU (((((((((..(((((((((.....)))))....((((((((.(((((.((....(((....)))....(((....))))).))))).))))))))...))))..))).)).)))).... ( -64.00) >DroAna_CAF1 117844 117 - 1 CCAGCAUCCCGUGGCGGCUAGCUGUUGACCGUAGGCGGCGGCAG---CAGCGGCGGCGCCCACUCCAUACGGGAAUCCUGCAGCGGCGGCGGCGGCCGAGUUGAGUGCCUGGGUGGCGAU ...((..(((...((.(((.(((((((.(((....)))))))))---)))).))(((((..........((((...))))((((..((((....)))).)))).))))).)))..))... ( -54.00) >DroPer_CAF1 119252 114 - 1 CCAGCAGCCGGUGGCCGCCAGCUGCUGGCCGUAAGCGGCGGCAG---CAGUG---GCCCCUAAGCCGUAUGGGAACCCGGCGGCGGCAGCGGCGGCGCUAUUGAGUGCCUGGGUGGCGAU (((.(.(((((.((((((..(((((((.(((....)))))))))---).)))---)))))...(((((.(((....)))...)))))...)))((((((....))))))..).))).... ( -65.20) >consensus CCAGCAGCCAGUGGCGGCCAGCUGCUGACCAUAGGCGGCAGCAG___CAGCAGCAGCGCCCACGCCAUACGGAAAACCGGCGGCAGCGGCGGCGGCGCUGUUCAGUGCCUGGCUGGCGAU ..........((.((((((.(((((((.((....((.((.((.......)).)).)).............((....))))))))))))))))).))..........(((.....)))... (-31.93 = -33.43 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:36 2006