Locus 8911

Sequence ID 3R_DroMel_CAF1
Location 23,908,295 – 23,908,391
Length 96
Max. P 0.995479
window14294

overview

Window 4

Location 23,908,295 – 23,908,391
Length 96
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 82.82
Mean single sequence MFE -33.74
Consensus MFE -24.36
Energy contribution -24.48
Covariance contribution 0.12
Combinations/Pair 1.16
Mean z-score -3.18
Structure conservation index 0.72
SVM decision value 2.58
SVM RNA-class probability 0.995479
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23908295 96 - 27905053
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUAUGCAUGUGCUCCACCGAGCGAGUGAGUGUGUGUGAGUAAGUG---
........((((((((((((((.((.........(((((((((.(....))))))))))..((((....)))))).)))))))))))).)).....--- ( -32.10)
>DroSec_CAF1 109719 96 - 1
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUAUGCAUGUGCUCCACUGAGCGCGUGAGUGGGUGUGAGCAAGUG---
.......((((((((((((..(((......)))...))))))))))))(((((...(((((((((....))))))))).)))))............--- ( -37.70)
>DroSim_CAF1 111538 96 - 1
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUAUGCAUGUGCUCCACCGAGCGCGUGAGUGUGUGUGAGCAAGUG---
.......((((((((((((..(((......)))...))))))))))))........(((.((((((((...((((....))))))).))))).)))--- ( -37.70)
>DroEre_CAF1 112947 99 - 1
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUAUGCGUGUGCUCCACUCGGUGAAGGAGUGUGUGUGAGUGCGUUAGU
.......((((((((((((..(((......)))...)))))))))))).(((.(((((..(((.((((((.......))))).).)))..)))))))). ( -34.20)
>DroAna_CAF1 117085 91 - 1
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUACGUGUACACUAUACACA-CACGUAAAGUCCUGC----CAUGC---
.......((((((((((((..(((......)))...)))))))))))).((.(((((((...........)-)))))).))......----.....--- ( -27.00)
>consensus
UUAAAAUAACCGCAUGCACUUAGUCAAUAUGCUUGUGUGUGUGCGGUUCCUAUAUGCAUGUGCUCCACCGAGCGCGUGAGUGUGUGUGAGCAAGUG___
.......((((((((((((..(((......)))...)))))))))))).......(((..((((.(((.......)))))))..)))............ (-24.36 = -24.48 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:33 2006