| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,903,969 – 23,904,077 |
| Length | 108 |
| Max. P | 0.654934 |
| Location | 23,903,969 – 23,904,077 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 87.32 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -16.98 |
| Energy contribution | -18.98 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23903969 108 + 27905053 CAAUGGCAUUAGCAUAUUUAAGUGCAUAUUU-----AUGCAGUCGUGCACAGGCUCUUUCUUUGAAUUUGGCAAAGCACGC--ACAAAAAUAUCAAAAAAUUUGGUUUUACUAAA- ...((..(((.(((((..((......))..)-----)))).(((((((....(((..(((...)))...)))...))))).--))...)))..)).....(((((.....)))))- ( -18.90) >DroSec_CAF1 104455 115 + 1 CAGUGGCAUUAGCAUAUUUAAGUGCAUAUUUACUAUAUGCAGUCGUGCGCAGGCUCUUUCUUUGAAUUUGCCAAUGCACGCUGACAAAAAUAUCAAAAAAUUAAAUAUUACAAAA- ((((((((((.(((.((((((((((((((.....)))))))(((.......)))......))))))).))).))))).)))))................................- ( -29.00) >DroSim_CAF1 107135 110 + 1 CAGUGGCAUUAGCAUAUUUAAGUGCAUAUUU-----AUGCAGUCGUGCGCAGGCUCUUUCUUUGAAUUCGCCAAUGCACGCUGACAAAAAUAUCAAAAAAUUAUAUAUUACGAAA- ..((((.....((((......))))((((((-----.(((((.((((((..(((...(((...)))...)))..))))))))).)).))))))..............))))....- ( -26.20) >DroEre_CAF1 108328 111 + 1 CAGUGGCAUUAGCAUAUUUAAGUGCAUAUUU-----AUGCAGUCGUGCGCAGGCUCUUUAUUUGAAUUCGACAAUGCACGCUGCCAAAAAUAUUAAAUAGUCUUAUAUUGCAAAUA ((((((((((.(((((..((......))..)-----)))).((((....((((.......))))....))))))))).)))))................................. ( -22.60) >consensus CAGUGGCAUUAGCAUAUUUAAGUGCAUAUUU_____AUGCAGUCGUGCGCAGGCUCUUUCUUUGAAUUCGCCAAUGCACGCUGACAAAAAUAUCAAAAAAUUAUAUAUUACAAAA_ ((((((((((.(((.((((((((((((.........)))))(((.......)))......))))))).))).))))).)))))................................. (-16.98 = -18.98 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:31 2006