| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,903,135 – 23,903,226 |
| Length | 91 |
| Max. P | 0.546654 |
| Location | 23,903,135 – 23,903,226 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.67 |
| Mean single sequence MFE | -31.28 |
| Consensus MFE | -24.56 |
| Energy contribution | -24.50 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23903135 91 + 27905053 -------CGCCGCCGCUGUGGUUUAUGCUUCAUAAAUGAAAAGUAAACUGCCGGACCGGGGGUAAUUGCCAAAGUUUCCUGGCAGCC--CGCUUUAGUGC------------- -------..((((((..(..((((((..((((....))))..))))))..))))..)))((((...(((((........))))))))--)((......))------------- ( -29.60) >DroPse_CAF1 112558 106 + 1 -CGCUGCCGCCGCCGCUGUGGUUUAUGUUUCAUAAAUGAAAAGUAAACUGCAGAACUGGGGGUAAUUGCCAAAGUUUCCUGGCAGCUCCUGGCUUAGUUCUGGUUC------U -.((((((.(((...(((..((((((.(((((....))))).))))))..)))...)))(((.((((.....)))).)))))))))....................------. ( -35.70) >DroWil_CAF1 137984 109 + 1 UCGCUGCCGCCGCCACUAUGGUUUAUGUUUCAUAAAUGAAAAGUAAACUGCCGGACUGGGGGUAAUUGCCAAAGUUUGCUGGCUGCU--UUGCUUA-UGU-GGUUCACUUUUU ((((.((.((.((((....(((((((.(((((....))))).)))))))((.(((((...(((....)))..))))))))))).)).--..))...-.))-)).......... ( -28.30) >DroYak_CAF1 110797 91 + 1 -------CGCCGCCGCUGUGGUUUAUGCUUCAUAAAUGAAAAGUAAACUGCCGGACCGGGGGUAAUUGCCAAAGUUUCCUGGCAGCC--CGCUUUAGUGC------------- -------..((((((..(..((((((..((((....))))..))))))..))))..)))((((...(((((........))))))))--)((......))------------- ( -29.60) >DroAna_CAF1 111659 91 + 1 -------CGCCGCCGCUGUGGUUUAUGCUUCAUAAAUGAAAAGUAAACUGCCGGUCCGGGGGUAAUUGCCAAAGUUUCCUGGCAGUC--CGGUUUAGUGC------------- -------(((.((((..(..((((((..((((....))))..))))))..)))))((((.....(((((((........))))))))--)))....))).------------- ( -28.60) >DroPer_CAF1 112219 106 + 1 -CUCUGCCGCCGCCGCUGUGGUUUAUGUUUCAUAAAUGAAAAGUAAACUGCAGGACUGGGGGUAAUUGCCAAAGUUUCCUGGCAGCUCCUGGCUUAGUUCUGGUUC------U -((..((((((.((((((..((((((.(((((....))))).))))))..)))...))).)))..((((((........)))))).....)))..)).........------. ( -35.90) >consensus _______CGCCGCCGCUGUGGUUUAUGCUUCAUAAAUGAAAAGUAAACUGCCGGACCGGGGGUAAUUGCCAAAGUUUCCUGGCAGCC__CGGCUUAGUGC_____________ ........(((.((((.(((((((((..((((....))))..))))))))).)...))).)))..((((((........))))))............................ (-24.56 = -24.50 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:30 2006