| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,901,979 – 23,902,075 |
| Length | 96 |
| Max. P | 0.549718 |
| Location | 23,901,979 – 23,902,075 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -26.59 |
| Consensus MFE | -14.84 |
| Energy contribution | -14.57 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23901979 96 + 27905053 AGCUGCUGCUC------------CUCCACCUCCU-------CCGCCCACAAAAAGAGGCCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU (((((((((.(------------(((........-------.............))))....))))))))).((((((...(((......)))))))))...(((.....))).. ( -23.00) >DroSec_CAF1 102453 109 + 1 AGCUGCUCCUCCACU------GCCUCCACCUCCUUCCUCUUACACCCACAAAAAGAGGCCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU (((.((...(((...------(((.((.(......((((((...........))))))....).)).)))..((((((...(((......)))))))))....)))...)).))) ( -25.20) >DroSim_CAF1 105129 109 + 1 AGCGGCUCCUCCACU------GCCUCCACCUCCUGCCUCUUCCAUCCACAAAAAGAGGCCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU ((((((...(((...------(((.((.(.....(((((((...........)))))))...).)).)))..((((((...(((......)))))))))....)))...)))))) ( -34.60) >DroEre_CAF1 106317 105 + 1 AACUGCUCCUCCG------CCUCCUCCACCUC----CCCUUCCACCCACAAAAAGAGGUCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU ...........((------(..((((......----..................))))....)))(((((..(((.(((((((.((....))...)))))))..)))..))))). ( -20.86) >DroYak_CAF1 109564 111 + 1 AGCUGCUCCUCCUCUGUGUCCUUCUCCACCUC----CUCUUCCGCCCACAAAAGGAGGCCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU .(((((.((((((.((((..(...........----.......)..))))..))))))....)))))(((..(((.(((((((.((....))...)))))))..)))..)))... ( -29.07) >DroAna_CAF1 110755 98 + 1 AGCCCCUCCUGCGCU------GCGGCCUGGUCC-----------UCCAAAGAAGAUGGCCCCGCGGCAUCUUAUCAGAAAUUACGUCAAAGUAUUUGAUUUUUGGAUUUGCCGCC ((((......).)))------(((((..(((((-----------.......((((((.((....))))))))((((((...(((......)))))))))....))))).))))). ( -26.80) >consensus AGCUGCUCCUCCACU______GCCUCCACCUCC___CUCUUCCACCCACAAAAAGAGGCCCUGCGGCGGCUUAUCAAAAAUUACGCCAAAGUAUUUGAUUUUCGGAUUUGCCGCU ..............................................................((((((.((.((((((...(((......)))))))))....))...)))))). (-14.84 = -14.57 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:29 2006