| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,883,168 – 23,883,258 |
| Length | 90 |
| Max. P | 0.801529 |
| Location | 23,883,168 – 23,883,258 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.25 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -15.59 |
| Energy contribution | -15.37 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23883168 90 + 27905053 -UGGCAAGGAAA-----A--------GCCACGGCUGGCAGAAAUUAAUUUAUAAUAGGCAUCCUUUACGAGAUGACAAGGCUGCUGAAUGAGAUAAUGGCAUCA---------------- -((((.......-----.--------))))......((....((((.(((((....((((.((((...........)))).))))..))))).)))).))....---------------- ( -16.60) >DroVir_CAF1 81315 98 + 1 -CAGCAGGCAGC-----G--------ACCGUAGAUGGUAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACAAGCAA-------- -..((.((....-----.--------.))((.((((.(....((((.(((((....(((((((((...........)))))))))..))))).))))).)))).))..))..-------- ( -21.70) >DroPse_CAF1 96330 106 + 1 AUCACAGGGUAA-----G-GCGGGCGGCCACGGCUGGCAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACGAGCAG-------- ............-----.-((...((((....))))((....((((.(((((....(((((((((...........)))))))))..))))).)))).))........))..-------- ( -24.50) >DroGri_CAF1 51489 106 + 1 -CAGCCAGCAGC-----A--------GCCGUGGAUGGUAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACAAGCAGCUGGCUGA -((((((((.((-----.--------((((....))))....((((.(((((....(((((((((...........)))))))))..))))).))))...........)).)))))))). ( -35.20) >DroWil_CAF1 119967 109 + 1 -CGACGAAGAAAUCGAGAGCCGGGUCGUCCUGGCUGGCAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACAAGC---------- -...(((.....)))..(((((((....))))))).((....((((.(((((....(((((((((...........)))))))))..))))).)))).))..........---------- ( -29.60) >DroPer_CAF1 96104 106 + 1 AUCACAGGGGAA-----G-GCGGGCGACCACGGCUGGCAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACGAGCAG-------- ............-----.-((((....)).((....((....((((.(((((....(((((((((...........)))))))))..))))).)))).)).....)).))..-------- ( -24.00) >consensus _CAACAAGGAAA_____A________GCCACGGCUGGCAAAAAUUAAUUUAUAAUAGGCAUCCUUUAUGAGAUGACAAGGAUGCUGAAUAAGAUAAUGGCAUCAACAAGCAG________ ..........................((((....))))....((((.(((((....(((((((((...........)))))))))..))))).))))....................... (-15.59 = -15.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:24 2006