Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,882,152 – 23,882,245 |
Length | 93 |
Max. P | 0.695366 |
Location | 23,882,152 – 23,882,245 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 86.36 |
Mean single sequence MFE | -32.22 |
Consensus MFE | -21.20 |
Energy contribution | -21.92 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -3.76 |
Structure conservation index | 0.66 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695366 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23882152 93 - 27905053 CUGCCAGCGGAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UAGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).(((((--((.......)))))))..((--((((......))))))................ ( -32.50) >DroSec_CAF1 88064 93 - 1 CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGU--UGGAAAAUGUGGCAGUACGA--CACUGGGAAAACUGUCCUUUUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).(((((--(.........))))))..((--((..((((......))))....))))...... ( -29.00) >DroSim_CAF1 88151 93 - 1 CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGU--UGGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).((..(--((....)))..)).....((--((((......))))))................ ( -35.90) >DroEre_CAF1 91994 94 - 1 CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UGGAAACAGUGGCAGUACGAAACACUGGGAAAAGUGUCCU-UUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).((..(--((....)))..))........(((((......)))))...-............. ( -35.10) >DroYak_CAF1 94428 95 - 1 CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGCUCUGGAAACAGUGGCAGUACGA--CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).(((((((((....))).))))))..((--((((......))))))................ ( -39.30) >DroAna_CAF1 95831 82 - 1 CUGCCAGGGAGUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC--UAAACA------CAGAAGGA--CACCGGAAGAAAAAUCAAUUAAU-----UGAU ((((((..(((((((.....)))))))..))))))..(((.--......------))).....--...(....)....(((((....)-----)))) ( -21.50) >consensus CUGCCAGCGAAUUGCAAUUUGCAAUUUUAUGGCAGCGCUGC__UGGAAACAGUGGCAGUACGA__CACUGGGAAAAGUGUCCUUUUAUGUCAAUUAU ((((((..(((((((.....)))))))..)))))).(((((.............)))))..((......((((......))))......))...... (-21.20 = -21.92 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:23 2006