| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,871,869 – 23,871,974 |
| Length | 105 |
| Max. P | 0.902082 |
| Location | 23,871,869 – 23,871,974 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -28.87 |
| Consensus MFE | -20.14 |
| Energy contribution | -19.95 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23871869 105 + 27905053 UUAAGUUAUGCGUGCGACAAGUUUCUUACUUUUUGUUCG--CUUUUCCCAAGCUUAACCCCUUCUUUCAUGAAGGUUUUUCCACU-----------GGUGUUGCAUGCAAUGUAGGCG ........(((((((((((...................(--(((.....))))......(((((......)))))..........-----------..)))))))))))......... ( -25.90) >DroSec_CAF1 76824 105 + 1 UUAAGUUAUGCGUGCGACAAGUUUCUUACUUUUUGUUUG--CUUUUCCCAAGCUUAACCCCUUCUUUCAUGAAGGUUUUUCCACU-----------GGUGUUGCAUGCAAUGCAGCCG ....((..(((((((((((...............(((.(--(((.....))))..))).(((((......)))))..........-----------..)))))))))))..))..... ( -27.20) >DroSim_CAF1 76396 105 + 1 UUAAGUUAUGCGUGCGACAAGUUUCUAACUUUUUGUUCG--CUUUUCCCAAGCUUAACCCCUUCUUUCAUGAAGGUUUUUCCACU-----------GGUGUUGCAUGCAAUGCAGCCG ....((..(((((((((((...................(--(((.....))))......(((((......)))))..........-----------..)))))))))))..))..... ( -26.80) >DroEre_CAF1 81665 105 + 1 UUAAGUUAUGCGUGCGACAAGUUCCUUACUUUUCGGUCG--CUUUUCCCAAGCUUAACCCCUUCUUUCACGAAGGUUUUUUCGCU-----------GGUGUUGCAUGCAACACAACCG ....((..((((((((((((((.((.........))..)--))....(((.((..((..(((((......)))))..))...)))-----------)))))))))))))..))..... ( -28.40) >DroYak_CAF1 83751 103 + 1 UUAAGUUAUGCGUGCGACAUGUUCCUUACCUUUCAGUCG--CUUUUCCUUAGCUUAACCCCUUCUUUCACG--GGGUUUUUCGCU-----------GGUGUUGCAUGCAACGCAAGCG .(((((((.....(((((.((............))))))--).......)))))))(((((.........)--))))....((((-----------.((((((....)))))).)))) ( -31.60) >DroAna_CAF1 84857 113 + 1 UUAAGUUAUGCGUGCGACGAGCUU-----UUCUUGGCCGUUCUUUCCCUUGGCUUAGCCCUUUUUGCCUCGAAGGCCUAUCCCCGCGAGUCGCCUAGCUGUUGCAUGCAACGUAACCG ....((((((((((((((.((((.-----..((((((((..........)))).(((.(((((.......))))).)))......))))......))))))))))))))...)))).. ( -33.30) >consensus UUAAGUUAUGCGUGCGACAAGUUUCUUACUUUUUGGUCG__CUUUUCCCAAGCUUAACCCCUUCUUUCACGAAGGUUUUUCCACU___________GGUGUUGCAUGCAACGCAACCG ........(((((((((((((((...........................)))))....(((((......)))))........................))))))))))......... (-20.14 = -19.95 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:22 2006