| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,869,923 – 23,870,024 |
| Length | 101 |
| Max. P | 0.608621 |
| Location | 23,869,923 – 23,870,024 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.87 |
| Mean single sequence MFE | -24.84 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23869923 101 + 27905053 -AGUGGUUCAGUGCUC-------CGUUGUCAGAGGCACUGUCAGGCGUUUCAAUUUACUUUUAUGUCUCGCAGCCUUAUCGCGGCGCAAAUUGAAAUGAAAUCUUGACA -........(((((..-------(.......)..)))))(((((((((((((((((((......))...((.(((.......))))))))))))))))....)))))). ( -29.30) >DroVir_CAF1 66457 88 + 1 -GUUGA-----UGCU---------------GUGUCGAGCGACAGGCAUUUCAAUUUACUUUUAUGUCUCGUUGCCUUAUCGCGGCGCAAAUUGAAACGAAAUCUUGACA -.(((.-----((((---------------(((..(((((((((((((..............)))))).)))).)))..)))))))))).................... ( -22.74) >DroPse_CAF1 81783 93 + 1 UAGUG--UCAGCGUC--------------CAGCGUCAGUGUCAGCCGUUUCAAUUUACUUUUAUGUCUCACAGCCUUAUCGCGGCGCAAAUUGAAAUGAAAUCUUGACA ...((--(((((...--------------..((....))....))(((((((((((.......((.....))(((.......)))..)))))))))))......))))) ( -19.80) >DroWil_CAF1 105597 80 + 1 -----------------------------CCAUGUCAGCGUCAGGCGUUUCAAUUUACUUUUAUGUCUCGGAGCCUUAUCGCGGCGCAAAUUGAAAUGAUAUCUUGACA -----------------------------..........(((((((((((((((((((......))......(((.......)))..)))))))))))....)))))). ( -19.30) >DroAna_CAF1 82966 108 + 1 -CGUGUUUCCAGGCUCUGGCCAUCGUUGUCAGAGCCACUGUCAGGCGUUUCAAUUUACUUUUAUGUCUCGCAGCCUUAUCGCGGCGCAAAUUGAAAUGAAAUCUUGACA -..........(((((((((.......)))))))))...(((((((((((((((((((......))...((.(((.......))))))))))))))))....)))))). ( -37.30) >DroPer_CAF1 81568 100 + 1 UAGUG--UCAGCGUCC-------AGCGUCCAGCGUCAGUGUCAGCCGUUUCAAUUUACUUUUAUGUCUCACAGCCUUAUCGCGGCGCAAAUUGAAAUGAAAUCUUGACA ...((--(((((...(-------((((.....)))...))...))(((((((((((.......((.....))(((.......)))..)))))))))))......))))) ( -20.60) >consensus _AGUG__UCAGCGCU______________CAGAGUCAGUGUCAGGCGUUUCAAUUUACUUUUAUGUCUCGCAGCCUUAUCGCGGCGCAAAUUGAAAUGAAAUCUUGACA .......................................(((((((((((((((((((......))......(((.......)))..)))))))))))....)))))). (-16.30 = -16.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:21 2006