Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 536,333 – 536,451 |
Length | 118 |
Max. P | 0.819303 |
Location | 536,333 – 536,451 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.35 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -20.68 |
Energy contribution | -20.02 |
Covariance contribution | -0.67 |
Combinations/Pair | 1.24 |
Mean z-score | -1.50 |
Structure conservation index | 0.74 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 536333 118 + 27905053 ACAGAUCUGGGCUGCACUCACGGCAAUUGUCGGCAGGUGCACAAAGCGCUAAAAUAUAUUGUUUGGGUGUAAAUUUAAAAAGACUG-CCCAACAGUUUCGAAUAUU-UUAGGUAUAUUAG ............((((((..((((....))))...))))))....((.(((((((((((((((.((((((............)).)-))))))))).....)))))-))))))....... ( -28.10) >DroSec_CAF1 13336 118 + 1 ACAGAUCUGGGUUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUAAUUUUAAAAAGACUG-CCUAACAGUUACAAAUAUU-AUAGGUAUAUUGA ....(((((...((((((..((((....))))...))))))....((((((((((.....))))))))))...........(((((-.....))))).........-.)))))....... ( -30.00) >DroEre_CAF1 14091 119 + 1 ACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUGAAAAGGACUAGCUUAACAGUUUGAAAUAUU-UUAGGUAUAUUGA .((((.((((((((((((..((((....))))...))))).(((((((((((.((.....)).)))))))..)))).........))))...))))))).......-............. ( -31.00) >DroYak_CAF1 13102 119 + 1 CCAGAUCUGGGCUGCACUCACGACAAUUGUCGGCAGGUGCACAAAGCGCUGAAAUAUAUUGUAUGGGUGUAAUUUUAAAAAGACUAGAAAAACAAUUUGAAAUAUU-UUAGGUAUAUUAA ....(((((((.((((((((((((....))))...(((((.....))))).............))))))))((((((((................))))))))..)-))))))....... ( -24.39) >DroAna_CAF1 13833 119 + 1 CCAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAAGUGCACAAAGCGCUCAAAUAUAUUGUUUGGGUGUGACUUAACAAUGCCAAAAUACUGAAUAUUAAUCUCU-AUACUUAUAACUA .(((((...((((((((...((((....))))....)))))....((((((((((.....))))))))))...........)))...)).))).............-............. ( -29.20) >DroPer_CAF1 14899 118 + 1 ACAGAUCUGGGCUGCACCCACGACAAUUGUCGCCAAGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUCUGAUUCAGUCCAACUUA-UCAUAAUCU-AUAAUCACUAAUAGCUACAAUUA ...(((.(((((((.(((((((((....))))...(((((.....))))).............)))))......)))))))....)-)).......-....................... ( -24.80) >consensus ACAGAUCUGGGCUGCACCCACGACAAUUGUCGGCAGGUGCACAAAGCGCUCAAAUAUAUUGUAUGGGUGUAAUUUUAAAAAGACUA_CCAAACAGUUUCAAAUAUU_AUAGGUAUAUUAA ............((((((((((((....))))...(((((.....))))).............))))))))................................................. (-20.68 = -20.02 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:45 2006