Locus 8899

Sequence ID 3R_DroMel_CAF1
Location 23,869,048 – 23,869,149
Length 101
Max. P 0.961264
window14279

overview

Window 9

Location 23,869,048 – 23,869,149
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 97.56
Mean single sequence MFE -26.22
Consensus MFE -23.68
Energy contribution -24.68
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.90
SVM decision value 1.52
SVM RNA-class probability 0.961264
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23869048 101 + 27905053
AUUCCUGGCUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCCU
....((((....(((.(((((((..(........)..)))))))..)))))))((((((..(((..((((.(((....)))..))))..).))..)))))) ( -28.40)
>DroSec_CAF1 74079 101 + 1
AUUCCUGGCUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCCU
....((((....(((.(((((((..(........)..)))))))..)))))))((((((..(((..((((.(((....)))..))))..).))..)))))) ( -28.40)
>DroSim_CAF1 73603 101 + 1
AUUCCUGGUUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCCU
....((((....(((.(((((((..(........)..)))))))..)))))))((((((..(((..((((.(((....)))..))))..).))..)))))) ( -28.40)
>DroEre_CAF1 78768 101 + 1
AUUCCUGGUUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCCU
....((((....(((.(((((((..(........)..)))))))..)))))))((((((..(((..((((.(((....)))..))))..).))..)))))) ( -28.40)
>DroYak_CAF1 80854 99 + 1
AUUCCUGGUUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUC--
....((((....(((.(((((((..(........)..)))))))..)))))))..((((..(((..((((.(((....)))..))))..).))..))))-- ( -23.10)
>DroAna_CAF1 76335 101 + 1
AUUCCAGUUUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGCCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCGU
.......(((..(((.(((((((..(........)..)))))))..)))..))).((((..((.(..(((.(((....)))..)))...).))..)))).. ( -20.60)
>consensus
AUUCCUGGUUUUAGUACGUGUAAUCCUUUUUCAUGAUUUGCACGCCACUUCAGAGGACAUUUGUCGGCCUUGGCAUUAGUCUCAGGUUAGUCGUUUGUCCU
....((((....(((.(((((((..(........)..)))))))..)))))))((((((..((.((((((.(((....)))..))))).).))..)))))) (-23.68 = -24.68 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:19 2006