Locus 8897

Sequence ID 3R_DroMel_CAF1
Location 23,867,684 – 23,867,783
Length 99
Max. P 0.987405
window14277

overview

Window 7

Location 23,867,684 – 23,867,783
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 70.95
Mean single sequence MFE -26.80
Consensus MFE -15.26
Energy contribution -14.93
Covariance contribution -0.33
Combinations/Pair 1.19
Mean z-score -2.08
Structure conservation index 0.57
SVM decision value 2.08
SVM RNA-class probability 0.987405
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23867684 99 - 27905053
AAGAGGUACAAAUUCAAUUUCGCUGCUAGACAUAAGUUUAACAGGUAUUUUUUCCUGUGUAGCAACACUUUCCCACACUGAAAAGUGGGCGUGGCCCUA
.((.(((..............((((((((((....)))))(((((........))))))))))..(((...(((((........))))).)))))))). ( -29.50)
>DroEre_CAF1 77531 88 - 1
ACGAGGUAA-AAUAUUAUUCCACAGGUAGCCAGGAUUUGAGCAGGUUUUUUUCCCUGUGUAGCAACACU----------GAAAAGUGGGCGUGGCUGUU
..(..((((-....))))..)((((.(((((.....(((.(((((........)))))....)))((((----------....))))))).)).)))). ( -24.00)
>DroYak_CAF1 79543 89 - 1
----GGUUC------AAUUCCACAGCUAGCCAGAACAUGAGCAGGUUUUUUUCCCUGUGUAGCAACACUUGCCCACACAAAAAAGUGGGCGUGGCUCUU
----.....------....((((.((((..((.....)).(((((........))))).)))).......((((((........))))))))))..... ( -26.90)
>consensus
A_GAGGUAC_AAU__AAUUCCACAGCUAGCCAGAACUUGAGCAGGUUUUUUUCCCUGUGUAGCAACACUU_CCCACAC_GAAAAGUGGGCGUGGCUCUU
...................((((.................(((((........)))))...((..(((((............))))).))))))..... (-15.26 = -14.93 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:17 2006