Locus 8896

Sequence ID 3R_DroMel_CAF1
Location 23,862,281 – 23,862,371
Length 90
Max. P 0.833255
window14276

overview

Window 6

Location 23,862,281 – 23,862,371
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 84.82
Mean single sequence MFE -21.03
Consensus MFE -16.42
Energy contribution -16.23
Covariance contribution -0.19
Combinations/Pair 1.19
Mean z-score -2.65
Structure conservation index 0.78
SVM decision value 0.72
SVM RNA-class probability 0.833255
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23862281 90 + 27905053
AAUCACUGAAAUGUAU-UCACAGAUUAUUGAAUCAAUCAUUUUGGUUAAGUAAACAAUUUGCACCAAAGGCGUUGAUUCAUAU--------GCUACAUA
((((..((((.....)-)))..))))..(((((((((..((((((((((((.....))))).)))))))..)))))))))...--------........ ( -19.80)
>DroSec_CAF1 67832 81 + 1
AAUCACUGAAAUGUAU-UCACAGAUUAUUGAAUCAAUCAUUUUGGUUAAGUAAACAAUUUGCACCAAAGGCGUUGAUUCA-----------------UA
((((..((((.....)-)))..))))..(((((((((..((((((((((((.....))))).)))))))..)))))))))-----------------.. ( -19.80)
>DroSim_CAF1 67283 90 + 1
AAUCACUGAAAUGUAU-UCACAGAUUAUUGAAUCAAUCAUUUUGGUUAAGUAAACAAUUUGCACCAAAGGCGUUGAUUCAUAU--------GCUACAUA
((((..((((.....)-)))..))))..(((((((((..((((((((((((.....))))).)))))))..)))))))))...--------........ ( -19.80)
>DroEre_CAF1 71805 89 + 1
AAUCACUGAAAUGUAU-UCACAGCUUAUUGAAUCAAUCAUUUUGGUUA-GUAAGCAAUUUGCGCCAAAGGCGUUGAUUCAUAU--------GCUGCAUA
......((((.....)-)))((((....(((((((((..(((((((..-(((((...))))))))))))..)))))))))...--------)))).... ( -23.30)
>DroYak_CAF1 73954 98 + 1
AAUCACUGAAAUGUAU-UCACAGCUUAUUGAAUCAAUCAUUUUGGUUAGGUAAGCAAUUUGCACCAAAGGCGUUGAUUCAAAUGCUGAAAUGCUGCAUA
............((((-(..((((...((((((((((..((((((((((((.....))))).)))))))..))))))))))..)))).)))))...... ( -26.70)
>DroAna_CAF1 69483 98 + 1
AAUCACUGAAAUGUAUUUCCCAGUCCAUUGAAUUAAUCAUUCUGGUUAAAUUAGCAAUUUGCACCAAAGGCGUUGAUUCAUAUUUCGGCA-AAUAUCCA
.....(((((((((...((...(.((.(((..((((((.....))))))....((.....))..))).)))...))...)))))))))..-........ ( -16.80)
>consensus
AAUCACUGAAAUGUAU_UCACAGAUUAUUGAAUCAAUCAUUUUGGUUAAGUAAACAAUUUGCACCAAAGGCGUUGAUUCAUAU________GCUACAUA
............................(((((((((..((((((((((((.....))))).)))))))..)))))))))................... (-16.42 = -16.23 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:16 2006