Locus 8895

Sequence ID 3R_DroMel_CAF1
Location 23,860,432 – 23,860,523
Length 91
Max. P 0.657645
window14275

overview

Window 5

Location 23,860,432 – 23,860,523
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.44
Mean single sequence MFE -23.88
Consensus MFE -15.83
Energy contribution -16.92
Covariance contribution 1.08
Combinations/Pair 1.15
Mean z-score -1.98
Structure conservation index 0.66
SVM decision value 0.26
SVM RNA-class probability 0.657645
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23860432 91 + 27905053
AUCAAAGGAUUGCCUUGUGGCCAACGAGUGACAAACGGCGAAUGAAAGUCGAAGGAAACAGAUGACAGC--------CAAACAGUCAAACGGGCAAAUU
..((((((....)))).))(((..((..((((...((((........))))..(....)..........--------......))))..)))))..... ( -20.00)
>DroPse_CAF1 72883 79 + 1
AUCAAAGGACUGCCUUGUGGCCAGCCAGCGACA---GGCGAA-AAGAGUCGAAGGAAACCGUUGACAGU----------------CAAACUGGUAAAUU
((((...((((((((.((.((......)).)))---)))...-....(((((.(....)..))))))))----------------)....))))..... ( -23.10)
>DroSec_CAF1 65997 93 + 1
AUCAAAGGAUUGCCUUGUGGCCAACGAGUGACAAACGGCGAAGGAAAGUCGAAGGAAACAGUUGACAGCC------CCAAACAGCCAAACUGGCAAAUU
......((.(((((((((.((......)).))))..))))).((...(((((.(....)..)))))..))------)).....(((.....)))..... ( -25.00)
>DroSim_CAF1 65451 93 + 1
AUCAAAGGAUUGCCUUGUGGCCAACGAGUGACAAACGGCGAAGGAAAGUCGGAGGAAACAGUUGACAGCC------CCAAACAGCCAAACUGGCAAAUU
......((.(((((((((.((......)).))))..))))).((...(((((.(....)..)))))..))------)).....(((.....)))..... ( -24.20)
>DroEre_CAF1 69968 99 + 1
AUCAAAGGAUUGCCUUGUGGCCAACGAGUGACAAACGGCGAAGGAAAGUCGAGGGAAACAGUUGACAGCCAAACAGCCAAACAGCCAAAGUGGCAAAUU
.........(((((...((((......((.....))(((...((...(((((.(....)..)))))..)).....))).....))))....)))))... ( -27.90)
>DroPer_CAF1 72925 79 + 1
AUCAAAGGACUGCCUUGUGGCCAGCCAGCGACA---GGCGAA-AAGAGUCGAAGGAAACCGUUGACAGU----------------CAAACUGGUAAAUU
((((...((((((((.((.((......)).)))---)))...-....(((((.(....)..))))))))----------------)....))))..... ( -23.10)
>consensus
AUCAAAGGAUUGCCUUGUGGCCAACGAGUGACAAACGGCGAAGGAAAGUCGAAGGAAACAGUUGACAGC________CAAACAGCCAAACUGGCAAAUU
.........(((((((((.((......)).))))..)))))......(((((.(....)..))))).................(((.....)))..... (-15.83 = -16.92 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:15 2006