Locus 8891

Sequence ID 3R_DroMel_CAF1
Location 23,853,876 – 23,853,977
Length 101
Max. P 0.756054
window14266

overview

Window 6

Location 23,853,876 – 23,853,977
Length 101
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -24.65
Consensus MFE -14.40
Energy contribution -14.96
Covariance contribution 0.56
Combinations/Pair 1.13
Mean z-score -2.36
Structure conservation index 0.58
SVM decision value 0.49
SVM RNA-class probability 0.756054
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23853876 101 + 27905053
----GGGGCGCAAAACAA------AAAAAAAUUGCAGCGCUGGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCAGGCGCACACACACCCA
----(((..((((.....------.......)))).((((((((((.(((.((((((((((..........))))))))))..))).))).))..))))).......))). ( -29.60)
>DroVir_CAF1 48938 97 + 1
AAGUGAGGC-AAC-----------AAAAAAGUUGCAGCGCUUGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUUGGAUGUCUGCACUCG--CACACUCACAUACA
..(((((((-(((-----------......))))).(((....(((.(((.((((((((((..........))))))))))..))).)))...))--)...)))))..... ( -28.30)
>DroSec_CAF1 59441 97 + 1
----GAGGCGCAAG----------AAAAAAGUUGCAGCGCUGGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCAGGCGCACACACACCCA
----..((.((((.----------.......)))).((((((((((.(((.((((((((((..........))))))))))..))).))).))..)))))........)). ( -26.40)
>DroSim_CAF1 58876 96 + 1
----GAGGCGCAA-----------AAAAAAGUUGCAGCGCUGGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCAGGCGCACACACACCCA
----..((.((((-----------.......)))).((((((((((.(((.((((((((((..........))))))))))..))).))).))..)))))........)). ( -26.20)
>DroWil_CAF1 87821 93 + 1
----GG---GUAA-----------AAAAAAGUUGCAACGCUGGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCGUAUACACAAACAUGGA
----((---((..-----------......((....))((.(((((.....((((((((((..........))))))))))..)))))))))))................. ( -16.40)
>DroAna_CAF1 61296 106 + 1
CU--UGGGCGCCCAACAAACCAGCAAAAAAGUUGCAGCGCUGGGCAAAUAAUGAAAAACACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCCAACACACACGCAA---
.(--(((....)))).......((......((((.((.((.(((((.....(((((((.((..........)).)))))))..))))))).)).))))......))..--- ( -21.00)
>consensus
____GAGGCGCAA___________AAAAAAGUUGCAGCGCUGGGCAAAUAAUGAAAAAUACACCCACAUCAGUAUUUUUCGGCUGUCUGCACUCAGGCACACACACACCCA
....(((((((.........................))))...(((.(((.((((((((((..........))))))))))..))).))).)))................. (-14.40 = -14.96 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:07 2006