| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,848,554 – 23,848,646 |
| Length | 92 |
| Max. P | 0.771932 |
| Location | 23,848,554 – 23,848,646 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.07 |
| Mean single sequence MFE | -25.86 |
| Consensus MFE | -13.52 |
| Energy contribution | -12.55 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23848554 92 - 27905053 UUUUCUUGCCUUUU-UUUU------C-----------AUCCUCCGGGGCUCGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGAAACGUGGUGUCGCUGGGUCUCCAGU .((((..(((((..-....------.-----------.......)))))..))))..(((..((((....))))..))).(((....)))......(((((....))))) ( -22.04) >DroPse_CAF1 58183 96 - 1 UGUUC---CCUUUUUCCUU---GGGCCAGUGACAGGGGACAUUUGGCGCUGGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGCAACGUGGCGA---CUGGCCU----- .....---...........---(((((((((((((((...((((((.((........))..))))))..))))))).((..((....))..)).)---)))))))----- ( -36.30) >DroEre_CAF1 57989 91 - 1 UU-UCUUCCCUUUU-UUUU----G-------------UUCCUCCGGGGCUCAAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGAAACGUGGUGGCGAUGGGUCUCCAGU ..-...........-....----.-------------.......((((((((.((((.......))))...((((((.(..((....))..))))))))))))).))... ( -23.50) >DroYak_CAF1 55120 98 - 1 UUUUCUUUCCUCUU-UUUUUUUUGGC-----------UUCCUCCGGGGCUCGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGAAAACGUGGUGGCGAUGGGUCUCCAGU ..............-........((.-----------.....))(((((((((((....))))........((((((.(..((....))..))))))).))))).))... ( -20.30) >DroAna_CAF1 55386 69 - 1 ---------------------------------------CGUACGCCGUUCGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGAAACAUGGCGA--CUGGUCUUUUGGU ---------------------------------------....((((((........(((..((((....))))..)))...(....)))))))(--(..(....)..)) ( -16.70) >DroPer_CAF1 58279 96 - 1 UGUUC---CCUUUUUCCUU---GGGCCAGUGACAGGGGACAUUUGGCGCUGGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGCAACGUGGCGA---CUGGCCU----- .....---...........---(((((((((((((((...((((((.((........))..))))))..))))))).((..((....))..)).)---)))))))----- ( -36.30) >consensus UUUUC___CCUUUU_UUUU____G_C___________GUCCUCCGGCGCUCGAAAUUGCUUUCAAAUUAUUUUGUCAGCUGCGGAAACGUGGCGA___UGGGCCUCCAGU ...............................................(((((..........((((....))))...((((((....)))))).....)))))....... (-13.52 = -12.55 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:06 2006