Locus 8889

Sequence ID 3R_DroMel_CAF1
Location 23,846,646 – 23,846,741
Length 95
Max. P 0.735084
window14264

overview

Window 4

Location 23,846,646 – 23,846,741
Length 95
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 76.25
Mean single sequence MFE -16.10
Consensus MFE -5.54
Energy contribution -5.60
Covariance contribution 0.06
Combinations/Pair 1.20
Mean z-score -2.45
Structure conservation index 0.34
SVM decision value 0.43
SVM RNA-class probability 0.735084
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23846646 95 - 27905053
ACCACC--GCG-GCCCAACCCAUUC-------CCAA--AA-------ACCACCAUCGGUGGCAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUACCAA
......--(((-(((..........-------....--..-------.(((((...)))))..((.....))...................))))))................. ( -19.10)
>DroPse_CAF1 56288 96 - 1
ACCGCC--AGG------AAGCAUUGCCGCCACCCUG--C--------AACACCAGAAGCAACAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUGCCAA
...((.--..(------(((..((((.((((...((--(--------..(....)..)))...((.....))..................)))).))))...))))...))... ( -16.70)
>DroEre_CAF1 56012 97 - 1
ACCACC--AUG-CCCUAACCCAUUC-------CCAAAAAA-------ACCAGCAGCGGUGGCAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUACCAA
..((((--.((-(............-------........-------....)))..))))(((((.....(.....).....(((....))))))))................. ( -13.66)
>DroYak_CAF1 53328 97 - 1
ACCACC--AUGGCCCUAACCCACUA-------CCAAA-AA-------ACCACCAUCGGUGGCAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUACCAA
..((((--((((.............-------.....-..-------....)))).))))(((((.....(.....).....(((....))))))))................. ( -14.46)
>DroAna_CAF1 53498 108 - 1
ACCACUCAACA-GCCCAAACCACCC--G--AUCCAGU-CAACCACCCGCCACCGGCAGUGGCAACAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUACCAA
.........((-(((..........--(--((...))-)........(((((.....))))).............................))))).................. ( -16.00)
>DroPer_CAF1 56397 96 - 1
ACCGCC--AGG------AAGCAUUGCCGCCACCCUG--C--------AACACCAGAAGCAACAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUGCCAA
...((.--..(------(((..((((.((((...((--(--------..(....)..)))...((.....))..................)))).))))...))))...))... ( -16.70)
>consensus
ACCACC__ACG__CC_AAACCAUUC_______CCAA__AA_______ACCACCAGCAGUGGCAGCAAUUCGCAUAACAAUAACAAUAACUUGGCUGCAAACAUUUCAAUACCAA
.........................................................(((((.((.....))..........(((....))))))))................. ( -5.54 =  -5.60 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:05 2006