Locus 8888

Sequence ID 3R_DroMel_CAF1
Location 23,845,024 – 23,845,115
Length 91
Max. P 0.500000
window14263

overview

Window 3

Location 23,845,024 – 23,845,115
Length 91
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -32.36
Consensus MFE -22.58
Energy contribution -22.62
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23845024 91 - 27905053
CAUGGGUCCCUGGGUUCAUGGGUCCAUGGGUCGAUGUCGAUGGCGAU------------GGGUUUGGGUUUGGGUAUGCAUAUGUGGACCGACCCUAGCUAAA
(((((..((.((....)).))..))))).((((....))))(((...------------(((((..(((..(.(((....))).)..))))))))..)))... ( -34.30)
>DroSec_CAF1 50562 85 - 1
CAUGGGUCCCUGGGUUCAUGGGUCCAUGGGUCGAUGUCG------AU------------GGGUUUGGGUUUGGGUAUGCAUAUGUGGACCGACCCCGGCUAAA
(((((..((.((....)).))..))))).((((....))------))------------.(((..(((((..(((.(((....))).))))))))..)))... ( -31.10)
>DroSim_CAF1 50078 79 - 1
UAUGGGUCCCUAGGUUCAUGGGUCCAUGGGUCGAUGGCG------AU------------GGGUU------UGGGUAUGCAUAUGUGGACCGACCCUGGCUAAA
...(((((((..((..((((....))))..))...))..------..------------.(((.------.(.(((....))).)..))))))))........ ( -26.20)
>DroEre_CAF1 54476 85 - 1
CAUGGGUCCCUGGGUUCAUGGGUCCAUGGGUCGAUGUCGAUGGCGA------------------UGGGUAUGGGUAUGCAUAUGUGGACCGACCCUGGCUAAA
((((..((....))..))))((.(((.((((((..(((.(((...(------------------((.(((....))).))).))).))))))))))))))... ( -32.00)
>DroYak_CAF1 51689 103 - 1
CAUGGGUCCCUGGGUUCAUGGGUCCAUGGGUCGAUGUCGAUGGCGAUGGCGAUGGCGAUGGCAAUGGGUAUGGGUAUGCAUAUGUGGACCGACCCUGGCUAAA
((((..((....))..))))((.(((.((((((..(((.((.((.((.((....)).)).)).....(((((......))))))).))))))))))))))... ( -38.20)
>consensus
CAUGGGUCCCUGGGUUCAUGGGUCCAUGGGUCGAUGUCGAUGGCGAU____________GGGUUUGGGUAUGGGUAUGCAUAUGUGGACCGACCCUGGCUAAA
((((..((....))..))))((((...((((((....)..................................(((.(((....))).)))))))).))))... (-22.58 = -22.62 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:05 2006