Locus 8886

Sequence ID 3R_DroMel_CAF1
Location 23,839,664 – 23,839,757
Length 93
Max. P 0.765504
window14261

overview

Window 1

Location 23,839,664 – 23,839,757
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.69
Mean single sequence MFE -20.68
Consensus MFE -16.36
Energy contribution -16.67
Covariance contribution 0.31
Combinations/Pair 1.10
Mean z-score -1.36
Structure conservation index 0.79
SVM decision value 0.51
SVM RNA-class probability 0.765504
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23839664 93 + 27905053
--G--AAUCGCUUGCCGC---CGACCA--AAUUUAAUGCGAAAUUGCUGUAAAGUGCCAUCAGCGCUAUCAGCGCGGCAUUUAACACUAAUUCAUAAUAAGA
--.--.......((((((---......--(((((......)))))((((...(((((.....)))))..))))))))))....................... ( -22.70)
>DroVir_CAF1 27256 88 + 1
------------UGCGCGAUGCCAAGG--AAUUUAAUGCGAAAUUGCUGUAAAGUGCCAUCAACGCUAUCAGCGCGGCAUUUAACACUAAUUCAUAAUAAGA
------------.....((((((..((--..((((..(((....)))..))))...)).....(((.....))).))))))..................... ( -16.50)
>DroGri_CAF1 2149 88 + 1
------------GGCCGGGGCCAAAGG--AAUUUAAUACGAAAUUGCUGUAAAGUGCCAUCAACGCUAUCAGCGCGGCAUUUAACACUAAUUCAUAAUAAGA
------------(((....))).....--..........(((.(((.(((.(((((((.....(((.....))).))))))).))).))))))......... ( -20.70)
>DroWil_CAF1 63751 88 + 1
--UCU-UUCGCCUGC---------CAC--AGUUUAAUGCGAAAUGGCUGUAAAGUGCCAUCAACGCUAUCAGCGUGGCAUUUAACACUAAUUCAUAAUAAGA
--...-......(((---------(((--.(((....(((..(((((........)))))...)))....)))))))))....................... ( -21.80)
>DroYak_CAF1 46127 97 + 1
GCG--AACCGCUUGCCGU---UGUCCAAAAAUUUAAUGCGAAAUUGCUGUAAAGUGCCAUCAGCGCUAUCAGCGCGGCAUUUAACACUAAUUCAUAAUAAGA
(((--...))).((((((---........(((((......)))))((((...(((((.....)))))..))))))))))....................... ( -21.90)
>DroAna_CAF1 46352 85 + 1
--G--CGA--------GG---AGUCGG--AAUUUAAUGCGAAAUUGCUGUAAAGUGCCAUCAGCGCUAUCAGCGUGGCAUUUAACACUAAUUCAUAAUAAGA
--(--(((--------..---..(((.--(......).)))..))))(((.(((((((....((((.....))))))))))).)))................ ( -20.50)
>consensus
__G_________UGCCGG___CGACGG__AAUUUAAUGCGAAAUUGCUGUAAAGUGCCAUCAACGCUAUCAGCGCGGCAUUUAACACUAAUUCAUAAUAAGA
.......................................(((.(((.(((.(((((((....((((.....))))))))))).))).))))))......... (-16.36 = -16.67 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:22:03 2006