| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,835,286 – 23,835,392 |
| Length | 106 |
| Max. P | 0.581224 |
| Location | 23,835,286 – 23,835,392 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.65 |
| Mean single sequence MFE | -27.58 |
| Consensus MFE | -24.01 |
| Energy contribution | -23.90 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23835286 106 + 27905053 ---------AACAAUGGGAG-----AACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA ---------((((((((((.-----...((((((.(((((..........))))).(((((((((........))))))))).....))))))))))))))))................. ( -26.10) >DroVir_CAF1 21914 113 + 1 -------CUCACAAUGGGAGCAGAGCACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACAUGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA -------...(((((((((((((........((....))(((........)))...(((((((((........))))))))).......))))))))))))).................. ( -29.20) >DroPse_CAF1 44777 115 + 1 UCCGUGGCUCACAAUGGGAA-----AACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA ..((((.(((.....)))..-----..))))(((....)))((((((((..((((.(((((((((........))))))))).))...))....)))))))).................. ( -26.90) >DroMoj_CAF1 25750 113 + 1 -------CUCACAAUGGGAGCGGAGCACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGGAACACGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA -------...(((((((((((((........((....))(((........)))...(((((((((........))))))))).......))))))))))))).................. ( -28.50) >DroAna_CAF1 41552 112 + 1 ACCGUG---CACAAUGGGAA-----AACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCCCAGCUUUUGGCCAUAAGAAACACGCUGCUUUUAUUGUUUUUAAUCAACUCGAAAA .((((.---....))))(((-----(((((((((.(((((..........))))).(((((((((........))))))))).....))))).......))))))).............. ( -27.91) >DroPer_CAF1 44894 115 + 1 UCCGUGGCUCACAAUGGGAA-----AACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA ..((((.(((.....)))..-----..))))(((....)))((((((((..((((.(((((((((........))))))))).))...))....)))))))).................. ( -26.90) >consensus _______CUCACAAUGGGAA_____AACACGGCGGAAGCGCACAAUAAAUUGCUUAUUUAUGGCUCAGCUUUUGGCCAUAAGAAACACGCUGUUUUUAUUGUUUUUAAUCAACUCGAAAA ..........(((((((((.........((((((.(((((..........))))).(((((((((........))))))))).....))))))))))))))).................. (-24.01 = -23.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:59 2006