Locus 8883

Sequence ID 3R_DroMel_CAF1
Location 23,832,974 – 23,833,068
Length 94
Max. P 0.919399
window14255

overview

Window 5

Location 23,832,974 – 23,833,068
Length 94
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 92.26
Mean single sequence MFE -27.86
Consensus MFE -23.22
Energy contribution -23.58
Covariance contribution 0.36
Combinations/Pair 1.21
Mean z-score -1.72
Structure conservation index 0.83
SVM decision value 1.13
SVM RNA-class probability 0.919399
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23832974 94 + 27905053
AGGAUAGGAAUAGCC----GGAUGGUGGGGUCAGUGAUUGGAUGGAUUCCGGUAGGGAGAUGGUGAAAAUCCUUCUGGCUUUCAUUCUUUACCAUUUA
.((..((((((((((----(((((.(((((((.((......)).))))))).))((((...........)))))))))))...))))))..))..... ( -26.50)
>DroSec_CAF1 38686 98 + 1
AGGAUAGGAAUAGCCAGACGGAUGGUGGGGUCAGUGAUUGGAUGGAUUCCGGCAGGGAGAUGGUGAAAAUCUUUUUGGCUUUCAUUCGUUACCAUUUA
.((...((.....)).(((((((((.((((((.((......)).))))))(.(((((((((.......))))))))).)..))))))))).))..... ( -28.80)
>DroSim_CAF1 38118 94 + 1
AGGAUAGGAAUAGCC----GGAUGGUGGGGUCAGUGAUUGGAUGGAUUCCGGCAGGGAGCUGGUGAAAAUCUUUCUGGCUUUCAUUCUUUACCAUUUA
.((..((((((.(((----((((.((..((((...))))..)).)..)))))).(..(((..(.(.....)...)..)))..)))))))..))..... ( -28.00)
>DroEre_CAF1 42281 94 + 1
AGGAUAGGAAUAGCC----GGAUGGUGGGGUCAGUGAUUGGAUGGAUUCCGGUAAGGAGAUGGUGAAAAUCUUUCUGGCUUUCCUUCUUCGCCAUUCA
.((..(((((.((((----(((((.(((((((.((......)).))))))).))..(((((.......)))))))))))))))))......))..... ( -28.70)
>DroYak_CAF1 39226 94 + 1
AGGAUAGAAAUAGCC----GGAUGGUGGGGUCAGUGAUUGGAUGGAUUUCGGUAAGGAGAUGGUGAAAAUCUUGCUGGCUUUCAUUCUUCACCAUUUA
.((.((....)).))----(((((((((((((...))))(((((((..(((((((((............)))))))))..))))))).))))))))). ( -27.30)
>consensus
AGGAUAGGAAUAGCC____GGAUGGUGGGGUCAGUGAUUGGAUGGAUUCCGGUAGGGAGAUGGUGAAAAUCUUUCUGGCUUUCAUUCUUUACCAUUUA
...................(((((((((((..(((((..(((.....)))(.(((((((((.......))))))))).)..)))))))))))))))). (-23.22 = -23.58 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:57 2006