Locus 8882

Sequence ID 3R_DroMel_CAF1
Location 23,831,724 – 23,831,818
Length 94
Max. P 0.656118
window14254

overview

Window 4

Location 23,831,724 – 23,831,818
Length 94
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 88.47
Mean single sequence MFE -20.62
Consensus MFE -16.65
Energy contribution -16.07
Covariance contribution -0.58
Combinations/Pair 1.19
Mean z-score -2.16
Structure conservation index 0.81
SVM decision value 0.26
SVM RNA-class probability 0.656118
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23831724 94 + 27905053
CUGAUAAUUGUGUU---CUGUUACGUUUUUCCGCUGCGCUACAGUUGCAUUUACUCGCAUUUU-CCGCAUACUUUAUGCAAAUGCGCAUCAAAUUACA
.((((....((((.---((((..(((.........)))..))))..)))).....(((((((.-..(((((...)))))))))))).))))....... ( -19.70)
>DroPse_CAF1 41148 97 + 1
UUGAUAAUUGUGUUCUUCUGCUCUGCUUUUCUGCU-UGUUGCAGUUGCAUUUACUUGCAUUUUGUUGCAUUCUUUAUGCAAAUGCGCAUCAAAUUACA
((((....(((((....((((...((......)).-....))))((((((.....((((......))))......))))))..)))))))))...... ( -21.50)
>DroSec_CAF1 37432 94 + 1
CUGAUAAUUGUGUU---CUGUUACGUUUUUCCGCUGCGCUACAGUUGCAUUUACUCGCAUUUC-CCGCAUACUUUAUGCAAAUGCGCAUCAAAUUACA
.((((....((((.---((((..(((.........)))..))))..)))).....(((((((.-..(((((...)))))))))))).))))....... ( -19.70)
>DroEre_CAF1 41015 94 + 1
CUGAUAAUUGUGUU---CUGUUACGUUUUUCCGCUGCGCUACAGUUGCAUUUACUCGCAUUUU-GCGCAUUCUUUAUGCAAAUGCGCAUCAAAUUACA
.((((....((((.---((((..(((.........)))..))))..)))).....(((((((.-..((((.....))))))))))).))))....... ( -19.80)
>DroAna_CAF1 37654 95 + 1
CUGAUAAUUGUGUU---CUGCUUCGCUUUUCCGCUGCGUUACAGUUGCAUAUAGUCGCAUUUUGCCGCAUUCUUUAUGCAAAUGCGCAUCAAAUUACA
.((((...(((((.---(((...(((.........)))...)))..)))))..(.(((((((....((((.....))))))))))))))))....... ( -21.50)
>DroPer_CAF1 41325 97 + 1
UUGAUAAUUGUGUUCUUCUGCUAUGCUUUUCUGCU-UGUUGCAGUUGCAUUUACUUGCAUUUUGUUGCAUUCUUUAUGCAAAUGCGCAUCAAAUUACA
((((....(((((....((((...((......)).-....))))((((((.....((((......))))......))))))..)))))))))...... ( -21.50)
>consensus
CUGAUAAUUGUGUU___CUGCUACGCUUUUCCGCUGCGCUACAGUUGCAUUUACUCGCAUUUU_CCGCAUUCUUUAUGCAAAUGCGCAUCAAAUUACA
.((((....((((....((((..(((.........)))..))))..)))).....(((((((....((((.....))))))))))).))))....... (-16.65 = -16.07 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:56 2006