| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,830,121 – 23,830,227 |
| Length | 106 |
| Max. P | 0.660236 |
| Location | 23,830,121 – 23,830,227 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.75 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23830121 106 - 27905053 ------------ACCGACG--CCGGCUCUGAAGUGCCUUUUUCAAUUUCCCCAGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGAAGUAAAAGUGCGCUUGGAGCGAGC ------------......(--(..(((((.((((((((((((((.(((......((((((((((.........))))))))))......))).)))...))))).)))))))))))..)) ( -36.50) >DroVir_CAF1 16354 104 - 1 ------------CGUGUUG--UCGGCACUGAAGUGCCUUUUUCAAUUUCCCCAGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGAAGUGAAG-UACGCCCACCACAA-C ------------..(((.(--(.(((.(.(((((((((((............))))))))))).)............((((((.(.(((.....))).).)))-)))))).)).))).-. ( -32.30) >DroPse_CAF1 39585 105 - 1 ------------GCCGACG--CCGGCACUGAAGUGCCUUUUUCAAUUUCCCCCGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGAAGUAAAAGUGUGCUCAGGCCCA-G ------------((((...--.)))).((((.(..(((((((((.(((......((((((((((.........))))))))))......))).)))...))))).)..))))).....-. ( -34.50) >DroWil_CAF1 52876 119 - 1 CCACUCCUUGGUGCCAACACCCAGGAACUGAAGUGCCUUUUUCAAUUUCCCCAGAGGCGCUUCCGAUCAAGCAGGAAGUGCUUAAGUUCAAACUGAAGUAAAAGUGCGCACAAACCCA-U ....((((.((((....)))).))))......((((((((((((.(((......((((((((((.........))))))))))......))).)))...))))).)))).........-. ( -35.60) >DroMoj_CAF1 18618 104 - 1 ------------UGCGCUG--UCGGCUCUGAAGUACCUUUUUCAAUUUCCCCAGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGGAGUGAAA-CACGCCCACCACAG-C ------------...((((--(.(((..(((((......))))).(((((((((((((((((((.........)))))))))).........)))).).))))-...)))....))))-) ( -32.00) >DroPer_CAF1 39777 105 - 1 ------------GCCGACG--CCGGCUCUGAAGUGCCUUUUUCAAUUUCCCCCGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGAAGUAAAAGUGUGCUCAGGCCCA-G ------------((((...--.))))(((((.(..(((((((((.(((......((((((((((.........))))))))))......))).)))...))))).)..))))))....-. ( -33.80) >consensus ____________GCCGACG__CCGGCACUGAAGUGCCUUUUUCAAUUUCCCCAGAGGCGCUUCCGAUCAAACAGGAAGUGCUUAAGUUCAAACUGAAGUAAAAGUGCGCUCAGACCCA_C ................................(((((((((...(((((.....((((((((((.........)))))))))).(((....))))))))))))).))))........... (-20.65 = -20.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:55 2006