| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,823,327 – 23,823,420 |
| Length | 93 |
| Max. P | 0.713005 |
| Location | 23,823,327 – 23,823,420 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 89.75 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -15.91 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713005 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23823327 93 - 27905053 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAU-UUCAAGCACAAA----AA-----------AU--CGAGCUG ......(((((.((...((((.(((...((((.(((((((.............))))))).))))...))-)....)))).))----))-----------))--)...... ( -18.82) >DroPse_CAF1 32173 101 - 1 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAU-UUCAAGCACAAA----AAAAAAAC---GAAU--CGAGCUG ......((((..((...((((.(((...((((.(((((((.............))))))).))))...))-)....))))...----.....)).---.)))--)...... ( -18.72) >DroWil_CAF1 44010 106 - 1 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUUCAUGUGGAAAAAU-UUCAAGCACAAA----AAAAAAACACAGAACAGAAAACUG .................((((.(((...((((.(((((((.............))))))).))))...))-)....))))...----..............(((....))) ( -15.12) >DroYak_CAF1 29450 94 - 1 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAUUUUCAAGCACAAA----AA-----------AU--CUAGCUG .....((((((.(((...((..(((...((((.(((((((.............))))))).))))...)))..))....))).----))-----------))--))..... ( -19.32) >DroAna_CAF1 29184 97 - 1 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAU-UUCAAGCACAAAAAAAAA-----------AU--CGAGCUG ......(((((.((...((((.(((...((((.(((((((.............))))))).))))...))-)....))))....)).))-----------))--)...... ( -20.02) >DroPer_CAF1 32325 101 - 1 AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUCGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAU-UUCAAGCACAAA----AAAAAUAC---GAAU--CGAGCUG ..(((.((((((((...(.((...((....)).)))..))))))))......((((((....))))))..-............----........---...)--))..... ( -12.70) >consensus AACGAAGAUUUAUUGCAGUGCCAGUGUGUCCAAGUGGAAAUAAAUCAAAUAAUUUUCCAUGUGGAAAAAU_UUCAAGCACAAA____AA___________AU__CGAGCUG .................((((..(.((.((((.(((((((.............))))))).))))...))...)..))))............................... (-15.91 = -15.94 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:53 2006