Locus 8878

Sequence ID 3R_DroMel_CAF1
Location 23,818,746 – 23,818,846
Length 100
Max. P 0.573115
window14249

overview

Window 9

Location 23,818,746 – 23,818,846
Length 100
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 85.75
Mean single sequence MFE -30.97
Consensus MFE -23.28
Energy contribution -23.20
Covariance contribution -0.08
Combinations/Pair 1.13
Mean z-score -2.25
Structure conservation index 0.75
SVM decision value 0.08
SVM RNA-class probability 0.573115
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23818746 100 - 27905053
UCUGUGU------GUGGAGU---GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCUGUUGAGCCCGGAAUUU-CGAUGGCAGCCACC
.......------((((...---........(((..((((((((.(((((.....)))))))))))))..))).(((((((((((........))-))))))))))))). ( -31.60)
>DroPse_CAF1 26872 95 - 1
-----------GGGAUGGGU---GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCUGUUGAAUCCGGAAUUU-CGAUGGCAGCCAAC
-----------......(((---........(((..((((((((.(((((.....)))))))))))))..)))..((((((((((........))-)))))))))))... ( -30.80)
>DroWil_CAF1 38167 96 - 1
UU----------GGCCGGGU---GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCUGUUAAAUCCGGAAUUU-CGAUGGCAGGCAAC
..----------..((((((---..(((...(((..((((((((.(((((.....)))))))))))))..)))....)))....)))))).....-.............. ( -30.10)
>DroYak_CAF1 24743 106 - 1
UCUGUGUGUGUGUGUGGGGU---GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUCGGUUACUUUGCUGUUGAGCCCGGAAUUU-CGAUGGCAGCCACC
.............((((...---........(((..(.((((((.(((((.....))))))))))).)..))).(((((((((((........))-))))))))))))). ( -27.70)
>DroAna_CAF1 24762 95 - 1
---------------GGGAUGUCGUCAGGCUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCUGUUGAAUCCGAAAUUUGCGAUGGCAGCCAAC
---------------.((.(((((((.(((.(((..((((((((.(((((.....)))))))))))))..)))...))).(((....))).......))))))).))... ( -31.90)
>DroPer_CAF1 26991 95 - 1
-----------GGGAUGGGU---GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCCGUUGAAUCCGGAAUUU-CGAUGGCAGCCAAC
-----------......(((---........(((..((((((((.(((((.....)))))))))))))..)))..((((((((((........))-)))))))))))... ( -33.70)
>consensus
____________GGAGGGGU___GUCAGAAUGUGGUCAAAAUGCCAAUUGCAAAACAAUUGCAUUUUGGUUACUUUGCUGUUGAAUCCGGAAUUU_CGAUGGCAGCCAAC
................((((.....(((...(((..((((((((.(((((.....)))))))))))))..)))....)))....))))...................... (-23.28 = -23.20 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:52 2006