Locus 8876

Sequence ID 3R_DroMel_CAF1
Location 23,813,305 – 23,813,408
Length 103
Max. P 0.870095
window14244

overview

Window 4

Location 23,813,305 – 23,813,408
Length 103
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 92.60
Mean single sequence MFE -32.15
Consensus MFE -25.84
Energy contribution -26.32
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.80
SVM decision value 0.87
SVM RNA-class probability 0.870095
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23813305 103 + 27905053
-----UUCUUGCUGUGCAGAUUUGCAUAGCCGGCUGAUCACAAGCUCUCAACUGAGCGGCG-AUCUAAUUGUUUACACCUGACUGAGGUGAUUUUGCUUAGUUUGCGAG
-----.....(((((((......))))))).((((.......))))(((((((((((((((-((...))))))..(((((.....))))).....))))))))...))) ( -31.50)
>DroSec_CAF1 18523 103 + 1
-----UUCUUGCUGUGCAGAUUUGCAUAGCCGGCUGAUCACAAGCUCUCAACUGAGCGGCG-AGCUAAUUGUUUACACCUGACUGAGGUGAUUUUGCUUAGUUUGCGAG
-----..((.(((((((......))))))).))....((....((((......)))).(((-((((((.......(((((.....))))).......))))))))))). ( -34.54)
>DroSim_CAF1 18579 104 + 1
-----UUCUUGCUGUGCAGAUUUGCAUAGCCGGCUGAUCACAAGCUCUCAACUGAGCAGCAAAGCUAAUUGUUUACACCUGACUGAGGUGAUUUUGCUUAGUUUGCGAG
-----.....(((((((......))))))).((((.......))))(((((((((((((..((((.....)))).(((((.....)))))...))))))))))...))) ( -33.10)
>DroEre_CAF1 18845 108 + 1
CACAUUUCUUUCUGUGUAGAUUUGCAUAGCCGGCUGAUCACAAGCUCUUCAGUGAGCGGCG-AGCUAAUUGUUUACACCUGACUGAGGAGAUUUUGCUUAGUUUGCGAG
............((((((....))))))((..(((((.((.((.(((((((((.((..(..-(((.....)))..)..)).))))))))).)).)).)))))..))... ( -33.10)
>DroYak_CAF1 19139 103 + 1
-----UUCUCCCUGUGUAGAUUUACAUAGCCGGCUGAUCACAAGCUCUUAACUGAGCGGCC-AGCUAAUUGUUUACACCUGACUGAGGUGAUUUUGCUUAGUUUGCGAG
-----..(((...((((((((.....((((.(((((....)..((((......))))))))-.))))...))))))))..(((((((.........)))))))...))) ( -28.50)
>consensus
_____UUCUUGCUGUGCAGAUUUGCAUAGCCGGCUGAUCACAAGCUCUCAACUGAGCGGCG_AGCUAAUUGUUUACACCUGACUGAGGUGAUUUUGCUUAGUUUGCGAG
.......((.((((((((....)))))))).))....((....((((......)))).(((.((((((.......(((((.....))))).......))))))))))). (-25.84 = -26.32 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:47 2006