Locus 8875

Sequence ID 3R_DroMel_CAF1
Location 23,813,093 – 23,813,188
Length 95
Max. P 0.806148
window14243

overview

Window 3

Location 23,813,093 – 23,813,188
Length 95
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 75.00
Mean single sequence MFE -15.55
Consensus MFE -8.55
Energy contribution -8.93
Covariance contribution 0.37
Combinations/Pair 1.20
Mean z-score -2.00
Structure conservation index 0.55
SVM decision value 0.63
SVM RNA-class probability 0.806148
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23813093 95 + 27905053
CAAAAAUACUUGGUUCACAGAUCGGAUUUCUUGAAACGAGAAACCUCCAGGUACACUGAAAAAAAAAUAUCAACUUCUAUUCUAUAAUAA-------CAAAU
......(((((((..........((.(((((((...))))))))).))))))).....................................-------..... ( -12.00)
>DroSec_CAF1 18316 92 + 1
CAAAAAUACUUGGUUCACAGAUAGGAUUUCUUGAAACGAGAAACCUUCAGGUACACUGAAA---AAAUAUCAAUUUCUAUUCUAUAAGAA-------CAAAU
............((((....(((((((((((((...)))))))..(((((.....))))).---...............))))))..)))-------).... ( -16.00)
>DroEre_CAF1 18628 81 + 1
CAGAAAUACUUGGUUCACAGAUCAGAUUUCU-GGAAUGUGAAACCUCCAGGUACACAGAAA---AAAUAA----------UCUAUAGCAC-------CAAAU
......(((((((((((((..((((....))-))..))))))....)))))))........---......----------..........-------..... ( -18.20)
>DroYak_CAF1 18945 89 + 1
CAAAAAUACUUGGUUCACAGAUCAGAUUGCUUGAAAUGUGAAACCUCCAGGUGCACAGAAA---AAAAAA----------CCACUAGUUCUUUAUUACGAAU
......(((((((((((((..((((.....))))..))))))....)))))))........---......----------......((((........)))) ( -16.00)
>consensus
CAAAAAUACUUGGUUCACAGAUCAGAUUUCUUGAAACGAGAAACCUCCAGGUACACAGAAA___AAAUAA__________UCUAUAAUAA_______CAAAU
......(((((((((((((....((....)).....))))))....)))))))................................................. ( -8.55 =  -8.93 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:46 2006