Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,811,735 – 23,811,827 |
Length | 92 |
Max. P | 0.855252 |
Location | 23,811,735 – 23,811,827 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.20 |
Mean single sequence MFE | -18.18 |
Consensus MFE | -16.06 |
Energy contribution | -15.95 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.67 |
Structure conservation index | 0.88 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.855252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23811735 92 + 27905053 CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUUU----UUUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA .............((((((((((((((.((....))....))))))......----..........(((....))).......))))))))..... ( -17.30) >DroSec_CAF1 16962 90 + 1 CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU------UCUUUAUUUGCCUAUUGGCCUUUAUCAGCGGAGCAAUUA .............((((((((((((((.((....))....)))))).....------.........(((....))).......))))))))..... ( -19.70) >DroSim_CAF1 17026 90 + 1 CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU------UCUUUAUUUGCCUAUUGGCAUUUAUCAGCGGAGCAAUUA .............((((((((((((((.((....))....)))))).....------....((..((((....))))..))..))))))))..... ( -22.00) >DroEre_CAF1 17302 87 + 1 CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAUGUUU---------UUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA .............((((((((..(((.(.((...((((..((.(((...---------...)))..))..))))))).)))..))))))))..... ( -17.30) >DroYak_CAF1 17617 96 + 1 CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUUUUUUUUUUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA .............((((((((((((((.((....))....))))))....................(((....))).......))))))))..... ( -17.30) >DroAna_CAF1 18067 86 + 1 CAUGUAUGAAUAAGCUCUGUUUUUAAUGUGUAAUCAAUCUGUUAG-UU---------UUUUUAUUUGCUUAUUGUCCUUUAUCAGCAGAGCAAUUA .............((((((((..(((.(.(....((((..((.((-(.---------.....))).))..)))).)).)))..))))))))..... ( -15.50) >consensus CAUGUGUGAAUAAGCUCUGCUCUUAAUGUGUAAUCAAUCUGUUAAGUUUUU______UUUUUAUUUGCUUAUUGGCCUUUAUCAGCGGAGCAAUUA .............((((((((((((((.((....))....))))))....................(((....))).......))))))))..... (-16.06 = -15.95 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:45 2006