Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,811,450 – 23,811,549 |
Length | 99 |
Max. P | 0.679040 |
Location | 23,811,450 – 23,811,549 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 76.22 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -13.81 |
Energy contribution | -14.54 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.22 |
Mean z-score | -1.90 |
Structure conservation index | 0.49 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23811450 99 + 27905053 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCUCGAUACAUACAUACA------UACAUAUGUGAUCAAUUUCGUGGUGUUGGCAGAGG-AAGGCCGGAAGACGUUUUC .((((....))))-...((((...((((((.((((((.(((..(((------(....))))((......))))))))))))).))))-.))))(....)........ ( -27.00) >DroPse_CAF1 17111 82 + 1 ACAUCCUUGGCCAAAAUGCCUUCGCCAUGCC----------------------ACAUAUGUGAUCAAUUUU-CGGUGGCGUCUGAUG-CACACCGGAACAGGACCU- ...((((((((.((......)).))))...(----------------------((....)))......(((-(((((((((...)))-).)))))))).))))...- ( -22.30) >DroSec_CAF1 16677 99 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGGCCGAUACAUACAUAUG------UACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGG-AAAGCCGGAAGACGUUUUC .((((....))))-((((.((((.((((.((((((((..((((((.------...))))))((......))...)))))))).))))-)))).(....).))))... ( -29.30) >DroSim_CAF1 16741 105 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGGCCGAUAAAUACAUAUAUAUACAUACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGA-AAAGCCGGAAGACGUUUUC .((((....))))-..((((..((((((((..(((..((.(((((((........)))))))))..)))))))))))..))))..((-((((.(....).).))))) ( -26.50) >DroEre_CAF1 17034 87 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCCUGAU------------------ACAUAUGUGAUCAAUU-UCGGGUGUUGGCAAAGGGAAAGCCGGAAGACGCUUUC .((((....))))-....((((((((.(((((((.------------------................-)))))))..))))))))(((((((....)..)))))) ( -32.63) >DroYak_CAF1 17344 91 + 1 AUAUCCUUGGAUA-GAUGCCUUUGCCUCGCCUGAUA--------UG------UACAUAUGUGAUCAAUUUUUGGGUGUUGGCAAAGG-CAAGCCGGAAGACGUUUUC .((((....))))-..((((((((((.((((..(.(--------(.------(((....)))....))..)..))))..))))))))-)).(.(....).)...... ( -30.70) >consensus AUAUCCUUGGAUA_GAUGCCUUUGCCUCGCCCGAUA________U_______UACAUAUGUGAUCAAUUUCGGGGUGUUGGCAGAGG_AAAGCCGGAAGACGUUUUC ...(((..((........((((((((.(((((........................................)))))..)))))))).....))))).......... (-13.81 = -14.54 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:44 2006