Locus 8872

Sequence ID 3R_DroMel_CAF1
Location 23,809,655 – 23,809,749
Length 94
Max. P 0.546677
window14240

overview

Window 0

Location 23,809,655 – 23,809,749
Length 94
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 79.41
Mean single sequence MFE -23.73
Consensus MFE -21.59
Energy contribution -22.03
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -0.16
Structure conservation index 0.91
SVM decision value 0.03
SVM RNA-class probability 0.546677
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23809655 94 + 27905053
CCGCUAC----CAUACAACCACCCACCACCUCCCCCCCCCCCCCCUGUUGGUCUGGUCAACCUGUCGGCUCAGAGGGAGCAAGCGGCUUACAGGUGCC
..((.((----(.....((((...((((.(................).)))).))))....((((..((((.....))))..))))......))))). ( -20.29)
>DroSec_CAF1 14913 76 + 1
CCGCUAC---CCAUACACCCA----C---------------CGCCUGUUGGCCUGGCCAACCUGUCGGCUCAGAGGGAGCAAGCGGCUUAAAGGUGCC
..(((.(---((.........----.---------------.(((....)))((((((........))).))).))))))....(((........))) ( -25.30)
>DroSim_CAF1 14962 79 + 1
CCGCUACACCCCAUACACCCA----C---------------CGCCUGUUGGCCUGGCCAACCUGUCGGCUCAGAGGGAGCAAGCGGCUUACAGGUGCC
.....................----.---------------(((((((.((((.((....)).((..((((.....))))..)))))).))))))).. ( -25.60)
>consensus
CCGCUAC___CCAUACACCCA____C_______________CGCCUGUUGGCCUGGCCAACCUGUCGGCUCAGAGGGAGCAAGCGGCUUACAGGUGCC
.........................................(((((((.((((.((....)).((..((((.....))))..)))))).))))))).. (-21.59 = -22.03 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:43 2006