Locus 8870

Sequence ID 3R_DroMel_CAF1
Location 23,808,958 – 23,809,068
Length 110
Max. P 0.768605
window14238

overview

Window 8

Location 23,808,958 – 23,809,068
Length 110
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -29.72
Consensus MFE -24.14
Energy contribution -24.44
Covariance contribution 0.30
Combinations/Pair 1.25
Mean z-score -2.17
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.768605
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23808958 110 + 27905053
UUUUGUAUUUUGGCUUAAUUACGCCCCGCUUUGCCAUAAAUUUGCUGGCGUU-UUGCGGUUAAUAUCUGCCGGCCA-AAUGCUUUAUCUACCGGCUUUCUCC-GAAAGCCGAG
....((((((.(((......(((((..((..............)).))))).-...((((........))))))))-))))).........((((((((...-)))))))).. ( -32.64)
>DroSec_CAF1 14207 110 + 1
UUUUGUAUUUUGGCUUAAUUACGCCCCGCUUUGCCAUAAAUUUGCUGGCGUU-UUGCGGUUAAUAUCUGCCGGCCA-AAUGCUUUAUCAGCCGGCUUUCUCC-AAAAGCCGAG
.........(((((((.........((((..(((((.........)))))..-..)))).........((((((..-............)))))).......-..))))))). ( -31.74)
>DroSim_CAF1 14255 111 + 1
UUUUGUAUUUUGGCUUAAUUACGCCCCGCUUUGCCAUAAAUUUGCUGGCGUU-UUGCGGUUAAUAUCUGCCGGCCA-AAUGCUUUAUCAGCCGGCUUUCUCCGAAAAGCCUAG
...........(((((.........((((..(((((.........)))))..-..)))).........((((((..-............))))))..........)))))... ( -29.74)
>DroEre_CAF1 14488 106 + 1
----GUAUUUUGGCUUAAUUACGCCCCGCUUUGUCAUAAAUUUGCUGGCGUU-UUGCGGUUAAUAUCUGCCGGCCA-AAUGCUUUAUCUGCCGGCUUUCUCU-GAAAGCCGAG
----((((((.(((......(((((..((..............)).))))).-...((((........))))))))-))))).........((((((((...-)))))))).. ( -32.64)
>DroYak_CAF1 14832 112 + 1
UUUUGUAUUUUGGCUUAAUUACGCCCCGCUUUGCCAUAAAUUUGCUGCCGUUUUUGUGGUUAAUAUCUGCCGGCCAAAAUGCUUUAUCUGCCGGCUUUCUCC-GAAAGCCGAG
....(((((((((((.......((........((((((((..((....))..))))))))........)).))))))))))).........((((((((...-)))))))).. ( -32.89)
>DroAna_CAF1 14799 87 + 1
-------UUUUGGCUUAAUUAUGUUUCGUUUUGCCAUAAAUUUGCUGGCAUU-UUGCGGUUAAUAUCUGCCAGCCG-AAUGCUUUAUGUGCC-----------------CAGG
-------...((((..(((........)))..)))).......((.((((((-(.(((((........))).)).)-))))))....))...-----------------.... ( -18.70)
>consensus
UUUUGUAUUUUGGCUUAAUUACGCCCCGCUUUGCCAUAAAUUUGCUGGCGUU_UUGCGGUUAAUAUCUGCCGGCCA_AAUGCUUUAUCUGCCGGCUUUCUCC_GAAAGCCGAG
....(((((.(((((.....(((((..((..............)).)))))....((((.......)))).))))).))))).........(((((((......))))))).. (-24.14 = -24.44 +   0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:42 2006