Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,002,015 – 3,002,112 |
Length | 97 |
Max. P | 0.592637 |
Location | 3,002,015 – 3,002,112 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -21.85 |
Consensus MFE | -12.17 |
Energy contribution | -13.50 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.56 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3002015 97 + 27905053 CCAUCGGGCACU-UUGAAUUUCAAUA-AUUGCUACACGCUUUUUUUUUUUUGCGUCUGUCCAAGUGUGACGUGUUCAUCAAACGUUGCACUCGGUUCUC ((...(((((..-(((.....)))..-........((((............)))).))))).((((..((((.........))))..)))).))..... ( -23.20) >DroVir_CAF1 44181 84 + 1 CCAGCGUCUAAU------AUCCAUUA-AUUGCUACACGCCU------UUGUGCGUCAGGCCGAGUGUGACGUGUUCAUCAAACAUUGCACCCAAGCC-- ..((((..((((------....))))-..))))....((..------..((((((((.((...)).))))(((((.....))))).))))....)).-- ( -17.90) >DroSec_CAF1 48309 93 + 1 CCAUCGGGCACU-UUGAAUUUCAAUA-AUUGCUACACGCUUUU----UUUUGCGUCUGUCCAAGUGUGACGUGUUCAUCAAACGUUGCACUCGGUUCUC ((...(((((..-(((.....)))..-........((((....----....)))).))))).((((..((((.........))))..)))).))..... ( -24.30) >DroSim_CAF1 48762 93 + 1 CCAUCGAGCACU-UUGAAUUUCAAUA-AUUGCAACACGCUUUU----UUUUGCGUCUGUCCAAGUGUGACGUGUUCAUCAAACGUUGCACUCGGUUCUC .......(((..-(((.....)))..-..)))...((((....----....))))....((.((((..((((.........))))..)))).))..... ( -22.50) >DroEre_CAF1 47601 91 + 1 CCGGCUGAUCAU-UUGAAUUUCAAUA-AUUGCUACACGCCU------UUUUGCGUUUGUCCGAGUGUGACGUGUUCAUCAAACGUUGCACUCGGUUCUC ..(((.(((...-(((.....)))..-))))))..((((..------....))))....(((((((..((((.........))))..)))))))..... ( -26.70) >DroAna_CAF1 41293 90 + 1 ---UCGUGCAAUUUAAAAUUUCAAUAAAUUUCUGCACGCUU------UUGUGCGUCUGUCCGACUGUGACGUGUUCAUCAAACAUUGCACUCCAUCUUG ---..(((((((.....................(((((...------.)))))((.((...(((........)))...)).)))))))))......... ( -16.50) >consensus CCAUCGGGCAAU_UUGAAUUUCAAUA_AUUGCUACACGCUU______UUUUGCGUCUGUCCAAGUGUGACGUGUUCAUCAAACGUUGCACUCGGUUCUC ...................................((((............))))....((.((((..((((.........))))..)))).))..... (-12.17 = -13.50 + 1.33)
Location | 3,002,015 – 3,002,112 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.42 |
Mean single sequence MFE | -21.83 |
Consensus MFE | -15.04 |
Energy contribution | -14.43 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.31 |
Mean z-score | -1.22 |
Structure conservation index | 0.69 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3002015 97 - 27905053 GAGAACCGAGUGCAACGUUUGAUGAACACGUCACACUUGGACAGACGCAAAAAAAAAAAAGCGUGUAGCAAU-UAUUGAAAUUCAA-AGUGCCCGAUGG .....(((((((..((((.(.....).))))..)))))))..(.((((............)))).).(((..-..(((.....)))-..)))....... ( -19.90) >DroVir_CAF1 44181 84 - 1 --GGCUUGGGUGCAAUGUUUGAUGAACACGUCACACUCGGCCUGACGCACAA------AGGCGUGUAGCAAU-UAAUGGAU------AUUAGACGCUGG --((((.(((((.......(((((....))))))))))))))..((((....------..)))).((((..(-((((....------)))))..)))). ( -20.91) >DroSec_CAF1 48309 93 - 1 GAGAACCGAGUGCAACGUUUGAUGAACACGUCACACUUGGACAGACGCAAAA----AAAAGCGUGUAGCAAU-UAUUGAAAUUCAA-AGUGCCCGAUGG .....(((((((..((((.(.....).))))..)))))))..(.((((....----....)))).).(((..-..(((.....)))-..)))....... ( -21.00) >DroSim_CAF1 48762 93 - 1 GAGAACCGAGUGCAACGUUUGAUGAACACGUCACACUUGGACAGACGCAAAA----AAAAGCGUGUUGCAAU-UAUUGAAAUUCAA-AGUGCUCGAUGG ......((((((((((((.(((((....))))).))........((((....----....)))))))))...-..(((.....)))-...))))).... ( -23.40) >DroEre_CAF1 47601 91 - 1 GAGAACCGAGUGCAACGUUUGAUGAACACGUCACACUCGGACAAACGCAAAA------AGGCGUGUAGCAAU-UAUUGAAAUUCAA-AUGAUCAGCCGG .....(((((((..((((.(.....).))))..)))))))....((((....------..))))...((.((-((((........)-)))))..))... ( -22.80) >DroAna_CAF1 41293 90 - 1 CAAGAUGGAGUGCAAUGUUUGAUGAACACGUCACAGUCGGACAGACGCACAA------AAGCGUGCAGAAAUUUAUUGAAAUUUUAAAUUGCACGA--- .........((((..((((((((............))))))))...))))..------...(((((((((((((....)))))))....)))))).--- ( -23.00) >consensus GAGAACCGAGUGCAACGUUUGAUGAACACGUCACACUCGGACAGACGCAAAA______AAGCGUGUAGCAAU_UAUUGAAAUUCAA_AGUGCCCGAUGG .....(((((((..((((.(.....).))))..)))))))....((((............))))................................... (-15.04 = -14.43 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:36 2006