Locus 8868

Sequence ID 3R_DroMel_CAF1
Location 23,808,114 – 23,808,212
Length 98
Max. P 0.954244
window14235

overview

Window 5

Location 23,808,114 – 23,808,212
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 94.69
Mean single sequence MFE -24.96
Consensus MFE -21.63
Energy contribution -21.57
Covariance contribution -0.05
Combinations/Pair 1.10
Mean z-score -2.12
Structure conservation index 0.87
SVM decision value 1.44
SVM RNA-class probability 0.954244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23808114 98 - 27905053
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGCCAAAUUGUGCAGAUUGGCGCACA----CAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((....))))))((((((.((.(((((...((((((((.(((((.......----)).)))...))))))))))))).))))))))......... ( -23.20)
>DroSec_CAF1 13401 102 - 1
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGCCAAAUUGUGCAGAUAGGCGCACACAUACAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((....))))))((((((.((.(((((...((((((((.((((..............))))...))))))))))))).))))))))......... ( -23.04)
>DroSim_CAF1 13447 102 - 1
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGCCAAAUUGUGCAGAUAGGCGCACAAAUACAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((....)))))).......((((.((....)).))))..(((((((.(((((((.....................))))))))))))))...... ( -25.10)
>DroEre_CAF1 13657 98 - 1
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGGCAAAUUGUGCAGAUAGGCGCACA----CAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((((.....(((((((......)))))))(((((((((.(((((.......----).))))...)))))))))....)))))))).......... ( -24.90)
>DroYak_CAF1 13990 98 - 1
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGGCAAAUUGUGCAGAUAGGCGCACA----CAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((((.....(((((((......)))))))(((((((((.(((((.......----).))))...)))))))))....)))))))).......... ( -24.90)
>DroAna_CAF1 14023 98 - 1
UUCGGCCAUAAUGAUGGCUGGAUCAACACAUUUGCCAAAUUGCGCAGAUGUACGCACA----CAUAUUAGAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
(((((((((....)))))))))..((((((((((((.....).)))))))).......----.....((((.(((((.......))))).))))....))). ( -28.60)
>consensus
UUCGGCCAUAAUGAUGGCUAGAUCAACACAUUUGCCAAAUUGUGCAGAUAGGCGCACA____CAUAUCAAAGCAUAAUUUAAAUUUGUGGUCUGUCAAGUUA
...((((((....))))))((((((.((.(((((...((((((((.((((..............))))...))))))))))))).))))))))......... (-21.63 = -21.57 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:39 2006