Locus 8864

Sequence ID 3R_DroMel_CAF1
Location 23,797,588 – 23,797,688
Length 100
Max. P 0.555194
window14228

overview

Window 8

Location 23,797,588 – 23,797,688
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 92.28
Mean single sequence MFE -15.47
Consensus MFE -14.62
Energy contribution -14.82
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -0.92
Structure conservation index 0.95
SVM decision value 0.04
SVM RNA-class probability 0.555194
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23797588 100 + 27905053
AAUUCCAUAAAAUUUAUUGUGCACUCUGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACCAAAU---CUACCUUCUCUCCGGAGUCUUGG
............(((((((.(((........))))))))))((((((....))))))..............((((..---((.((........))))..)))) ( -16.20)
>DroSec_CAF1 2932 100 + 1
AAUUCCAUAUAAUUUAUUGUGCACUCCGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACCAAAU---CUACCUUCUCUCCGGAGUCUUGG
............(((((((.(((........))))))))))((((((....))))))..............((((..---((.((........))))..)))) ( -16.20)
>DroSim_CAF1 2935 100 + 1
AAUUCCAUAAAAUUUAUUGUGCACUCCGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACCAAAU---CUACCUUCUCUCCGGAGUCUUGA
.(((((......(((((((.(((........))))))))))((((((....))))))....................---.............)))))..... ( -15.60)
>DroEre_CAF1 2994 100 + 1
AAUUCCAUAAAAUUUAUUGUGCACUCCGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACGAAAU---CUACCUUCUCUCCGGAGUCUUGG
.(((((......(((((((.(((........))))))))))((((((....))))))....................---.............)))))..... ( -15.60)
>DroYak_CAF1 3089 100 + 1
AAUUCCAUAAAAUUUAUUGUGCACUCCGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACGAAAU---CCACCUUCUCACCGGAGUCUUGG
.(((((......(((((((.(((........))))))))))((((((....))))))....................---.............)))))..... ( -15.60)
>DroAna_CAF1 2748 103 + 1
AAUUCCAUAAAAUUUAUUGUGUACUCUGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACCGACUUCUUUACUUACUGAAUGGACACUGGA
...(((((....(((((((.(((........))))))))))((((((....))))))..................................)))))....... ( -13.60)
>consensus
AAUUCCAUAAAAUUUAUUGUGCACUCCGAUAUGCCAAUAAGAACAUUGUCAAAUGUUAAUUUCACGCCUCACCAAAU___CUACCUUCUCUCCGGAGUCUUGG
.(((((......(((((((.(((........))))))))))((((((....))))))....................................)))))..... (-14.62 = -14.82 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:32 2006