Locus 8863

Sequence ID	3R_DroMel_CAF1
Location	23,797,143 – 23,797,236
Length	93
Max. P	0.977081

overview

Window 7

Location	23,797,143 – 23,797,236
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	90.28
Mean single sequence MFE	-28.14
Consensus MFE	-22.28
Energy contribution	-23.24
Covariance contribution	0.96
Combinations/Pair	1.04
Mean z-score	-2.39
Structure conservation index	0.79
SVM decision value	1.78
SVM RNA-class probability	0.977081
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23797143 93 + 27905053
UUUUUUUGCGCUGAUUAUGCUGUGUGUGAAUGGGCUGCAUUUGCAUAAAUGACGCCUAUCAAAGCGACAAAGGCCCUCUACAUGGCCUAUGAA
.....((((..((((...((..((((..((((.....))))..))))......))..))))..))))((.(((((........))))).)).. ( -25.80)
>DroSec_CAF1 2489 93 + 1
UUUUUUCGCGCUGAUUAUGCUGUGUGUGAAUGGGCUGCAUUUGCAUAAAUGACGCCUAUCAAAGCGACAAAGGCCCUCUGCAUGGCCUAUGAA
.....((((..((((...((..((((..((((.....))))..))))......))..))))..))))((.(((((........))))).)).. ( -27.90)
>DroSim_CAF1 2503 88 + 1
UU-UUUCGCGCUGAUUAUGCUGUGUGUGAAUGGGCUGCAUUUGCAUAAAUGACG----UCAAAGCGACAAAGGCCCUCUGCAUGGCCUAUGAA
..-..((((..((((.......((((..((((.....))))..))))......)----)))..))))((.(((((........))))).)).. ( -27.42)
>DroEre_CAF1 2501 89 + 1
CUUUUUCGCGCUGAUUAUUCUG--UGUGAAUGGGCUGCAUUUGCAUAAAUGACGCCAAUCAAAGCGACAAAGGCCU--UACAUGGCCUAUGAA
.....((((..(((((((((..--...)))).(((..(((((....)))))..))))))))..))))((.(((((.--.....))))).)).. ( -29.30)
>DroYak_CAF1 2627 89 + 1
CAUUUUUGCGCUUAUUAUUCUG--UGUGAAUGGGCUGCAUUUGCAUAAAUGCCGCCAAUCAAAGCGACAAAGGCCU--UACAUGGCCUAUGAA
.....((((((((..(((((..--...)))))(((.((((((....)))))).))).....))))).)))(((((.--.....)))))..... ( -30.30)
>consensus
UUUUUUCGCGCUGAUUAUGCUGUGUGUGAAUGGGCUGCAUUUGCAUAAAUGACGCCAAUCAAAGCGACAAAGGCCCUCUACAUGGCCUAUGAA
.....((((..((((....(..((((..((((.....))))..))))...)......))))..))))((.(((((........))))).)).. (-22.28 = -23.24 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:31 2006