Locus 8862

Sequence ID 3R_DroMel_CAF1
Location 23,796,077 – 23,796,171
Length 94
Max. P 0.601525
window14226

overview

Window 6

Location 23,796,077 – 23,796,171
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.53
Mean single sequence MFE -30.10
Consensus MFE -26.49
Energy contribution -27.35
Covariance contribution 0.86
Combinations/Pair 1.04
Mean z-score -1.35
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.601525
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23796077 94 + 27905053
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGU------A-UAGCCCCAUUCACAUUCGC-------------------
..(((...((((((((((.(....)((((.(((...((((....))))..)))))))...)))))))))).((.------.-...)))))...........------------------- ( -31.20)
>DroSec_CAF1 1414 94 + 1
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGU------A-UGGCCCCAUUCACAUUCAC-------------------
..((((.((((......))))(((.((((.(((...((((....))))..)))))))...)))(((.((((...------.-))))))).)))).......------------------- ( -32.20)
>DroSim_CAF1 1421 94 + 1
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGU------A-UAGCCCCAUUCACAUUCAC-------------------
..(((...((((((((((.(....)((((.(((...((((....))))..)))))))...)))))))))).((.------.-...)))))...........------------------- ( -31.20)
>DroEre_CAF1 1447 107 + 1
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGUACUCGUA-UAGCCCCAUUCACAUUCACAUU------------CAAA
..(((.((((((((((((.(....)((((.(((...((((....))))..)))))))...))))))))))..(((....))-).)).)))..............------------.... ( -33.10)
>DroYak_CAF1 1507 113 + 1
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGU------A-UAGCCCCAUUCACAAUCACAUUCACAUUCGUAUUCGUA
..(((...((((((((((.(....)((((.(((...((((....))))..)))))))...)))))))))).((.------.-...))))).............................. ( -31.20)
>DroAna_CAF1 1339 92 + 1
CCUGGAGCGGCACUCAGGACGAGAGUUGCAGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUUUGUGUCUACC------ACUACACCCAU----CUU------------------CUAC
..(((.(((((.(((.....))).))))).(((...((((....))))..)))............((((.....------...))))))).----...------------------.... ( -21.70)
>consensus
CCUGGAGCGGCACUCAGGCCGAGAGUUGUUGCAUAAAUGCAGUUGCAUGUUGCACAAACAUCUGGGUGCCAGGU______A_UAGCCCCAUUCACAUUCAC___________________
..(((...((((((((((.(....)((((.(((...((((....))))..)))))))...)))))))))).(((..........)))))).............................. (-26.49 = -27.35 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:30 2006