Locus 8860

Sequence ID 3R_DroMel_CAF1
Location 23,793,100 – 23,793,220
Length 120
Max. P 0.620189
window14224

overview

Window 4

Location 23,793,100 – 23,793,220
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.94
Mean single sequence MFE -39.53
Consensus MFE -33.45
Energy contribution -33.70
Covariance contribution 0.25
Combinations/Pair 1.26
Mean z-score -1.67
Structure conservation index 0.85
SVM decision value 0.18
SVM RNA-class probability 0.620189
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23793100 120 - 27905053
AGGUGGCCGUCUGCGACAUCCCGCCCCGUGGGCUCAAGAUGUCCGCCACCUUCAUUGGCAACUCGACCGCCAUCCAGGAGAUCUUUAAGCGCAUCUCCGAGCAGUUCACUGCCAUGUUCC
.((((((.(((.(.((((((..((((...))))....)))))))((((.......)))).....))).))))))..(((((((.......).))))))(.((((....)))))....... ( -44.30)
>DroVir_CAF1 3075 120 - 1
AGGUGGCCGUUUGUGACAUUCCGCCACGCGGCCUCAAGAUGGCGGCCACAUUCAUUGGCAACACCACAGCCAUUCAGGAGAUAUUCAAGCGCAUCUCCGAACAAUUUACGGCCAUGUUCC
..((((((((((((......((((...))))..((..((((((.((((.......)))).........))))))..((((((..........))))))))))))...))))))))..... ( -37.60)
>DroGri_CAF1 3531 120 - 1
AGGUGGCCGUUUGUGACAUUCCGCCACGCGGCCUGAAGAUGGCUGCCACAUUCAUUGGCAACACAACGGCCAUACAGGAGAUAUUUAAGCGCAUCUCCGAACAGUUUACGGCCAUGUUCC
..((((((((....(((.....(((..((((((.......)))))).........((....))....)))......((((((..........)))))).....))).))))))))..... ( -40.80)
>DroWil_CAF1 2946 120 - 1
AGGUGGCUGUCUGUGAUAUACCACCACGUGGCCUCAAGAUGUCCGCCACUUUCAUUGGCAAUUCGACGGCCAUUCAAGAGAUCUUCAAACGCAUCUCUGAGCAGUUUACCGCCAUGUUCC
.(((((....((((.............((((((((..(.....)((((.......)))).....)).))))))(((.((((((.......).))))))))))))....)))))....... ( -33.20)
>DroMoj_CAF1 2679 120 - 1
AGGUGGCCGUCUGUGACAUUCCGCCGCGCGGGCUCAAGAUGUCGGCCACAUUCAUUGGCAAUACGACGGCCAUUCAGGAGAUAUUCAAGCGCAUCUCCGAGCAGUUUACGGCCAUGUUCC
..((((((((....(((...((((...))))((((....(((((((((.......))))....)))))........((((((..........)))))))))).))).))))))))..... ( -42.80)
>DroAna_CAF1 4019 120 - 1
AAGUGGCCGUAUGCGACAUCCCGCCCAGAGGCCUCAAGAUGUCCGCCACCUUCAUUGGCAACUCCACGGCCAUCCAGGAGAUCUUCAAGCGCAUCUCCGAGCAAUUCACCGCCAUGUUCC
..((((((((..(.((((((..(((....))).....)))))))((((.......))))......))))))))...(((((((.......).))))))(((((...........))))). ( -38.50)
>consensus
AGGUGGCCGUCUGUGACAUUCCGCCACGCGGCCUCAAGAUGUCCGCCACAUUCAUUGGCAACACGACGGCCAUUCAGGAGAUAUUCAAGCGCAUCUCCGAGCAGUUUACGGCCAUGUUCC
.((((((((((...((((((((((...))))......)))))).((((.......)))).....))))))))))..((((((..........))))))(((((...........))))). (-33.45 = -33.70 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:28 2006