Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,996,567 – 2,996,657 |
Length | 90 |
Max. P | 0.730416 |
Location | 2,996,567 – 2,996,657 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 78.77 |
Mean single sequence MFE | -27.28 |
Consensus MFE | -17.05 |
Energy contribution | -18.25 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.29 |
Mean z-score | -1.63 |
Structure conservation index | 0.62 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2996567 90 - 27905053 GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUUUGGUGGAGUGGGA-------GAUCAAUUUUAAAGCAGGGGUUGUGGAACUAGGCA ((((..(((((((((.......((((.((((.....)))))))).((((((..(.-------...).))))))..)).)))))))..))))...... ( -27.70) >DroSec_CAF1 42961 90 - 1 GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUGCGGAGGAGUGGGA-------GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA ((((..(((((((..............((((.....))))(((..((((((((..-------..))))))))...))))))))))..))))...... ( -32.40) >DroSim_CAF1 40974 90 - 1 GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUGCGGAGGAGUGGGA-------GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA ((((..(((((((..............((((.....))))(((..((((((((..-------..))))))))...))))))))))..))))...... ( -32.40) >DroEre_CAF1 42407 88 - 1 GUUCUGCGGCUUCGCAAACAAACAAAUGAAA--ACAGUUCCUCGGGGGAGUGGGA-------GAUCACUUUUGAAUCAGGGGUUGUGAAACGGGGCA ((((((((....)))................--((((..(((.((.(((((((..-------..)))))))....)))))..)))).....))))). ( -22.40) >DroYak_CAF1 50422 89 - 1 GUUCUGCGGCUUUGCAAGCAAACAAAUGAAAAGACAGUUCUUCGGAGGAGUGGGA-------GAUCACUUU-AAUGCCGGGCCUGUAGAACGGGGCA (((((((((((..(((......................((....))(((((((..-------..)))))))-..)))..)))).)))))))...... ( -29.00) >DroAna_CAF1 35939 89 - 1 GUUCUGCGGCUCCAC----AAACAAAUGAACAGACAGCUUGUCAAAGCGGUUGGAAGCUAGGGUUAACAUUCGA----GGGGGCGUUACUAGAGGCA .(((((((.((((..----.............(((.....)))....((..((..(((....)))..))..)).----)))).)))....))))... ( -19.80) >consensus GUUCUGCGGCUCCGCAAACAAACAAAUGAACAGACAGUUCUUCGGAGGAGUGGGA_______GAUCACUUUUGAAGCAGGGGUUGUGGAACGGGGCA (((((((((((((..............((((.....))))......(((((((...........))))))).......)))))))))))))...... (-17.05 = -18.25 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:34 2006