| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,760,848 – 23,760,945 |
| Length | 97 |
| Max. P | 0.859555 |
| Location | 23,760,848 – 23,760,945 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -36.72 |
| Consensus MFE | -22.08 |
| Energy contribution | -23.20 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23760848 97 - 27905053 AUCUAGUGCGCUGCUCGCGCACCUGCUCGAGCUGGCUGCAUGCCGACUGCCUGGAACGAAAGGUGACAGGAGCUCCGAUGCCCAAAAU--------AGGCAGUCG .....((((((((((((.((....)).))))).))).))))..((((((((((........(....).((.((......))))....)--------))))))))) ( -42.70) >DroVir_CAF1 14055 105 - 1 AUAUACAGCGCUGUUCGCUCAACUGCAACAGUUGGUUGCAUGCCACUUGCUUGGACCAACAAAUAACUGUAAAUACUAAAGCAAAGAAGGGUCUAAAGGCAGUCG ...(((((...((((.((......))))))(((((((.((.((.....)).)))))))))......)))))..............((...(((....)))..)). ( -23.30) >DroSec_CAF1 13677 97 - 1 AUCUUGUGCGCUGCUCGCGCACCUGCUCGAGCUGGCUGCAUGCCGACUGCCUGGAACGAAAGGAGACAGGAGCUCCGAUGCCCAAAAU--------AGGCAGUCG .....((((((((((((.((....)).))))).))).))))..((((((((((........(....).((.((......))))....)--------))))))))) ( -42.60) >DroEre_CAF1 14400 97 - 1 AUCUUGUGCGCUGUUCGCGCAGCUGCUCGAGCUGGCUGCAUGCCGACUGCCUGGAACGAAAGGAGACAGGAGCUCCGAUGCCCAAAGU--------AGGCAGUCG .....((((((((((((.((....)).))))).))).))))..((((((((((........(....).((.((......))))....)--------))))))))) ( -40.10) >DroYak_CAF1 12216 97 - 1 AUCUAGUGCGCUGUUCGCGCAGCUGCUCGAGCUGGCUGCAUGCCGACUGCCUGGAACGAAAGGAGACAGGAGCUCCGAUGCCCAAAAU--------AGGCAGUCG .....((((((((((((.((....)).))))).))).))))..((((((((((........(....).((.((......))))....)--------))))))))) ( -40.30) >DroAna_CAF1 12121 97 - 1 AUCUGCAACGAUGUUCGCGCAACUGCAACAACUGGCUGCACGGGGACUGCUUGGAGCGAAAGAAAUCCGGCACACCCCUGCCUAAAAA--------AGGUGGCCG ...........((((.(((....)))))))...((((....((((..((((.(((.(....)...)))))))..)))).((((.....--------)))))))). ( -31.30) >consensus AUCUAGUGCGCUGUUCGCGCAACUGCUCGAGCUGGCUGCAUGCCGACUGCCUGGAACGAAAGGAGACAGGAGCUCCGAUGCCCAAAAU________AGGCAGUCG .....((((((((((((.((....)).))))).))).))))..(((((((((....(....)......((....))....................))))))))) (-22.08 = -23.20 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:23 2006