Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,760,535 – 23,760,641 |
Length | 106 |
Max. P | 0.770521 |
Location | 23,760,535 – 23,760,641 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 76.71 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -22.36 |
Energy contribution | -21.28 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.35 |
Mean z-score | -1.37 |
Structure conservation index | 0.66 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23760535 106 - 27905053 --CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUAUGUGUGGAAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU --..((((.(---((...)))..((.((.....((((((.(((...(((((((((.....))))))))).)))))))))......))..)).)))).((....))...... ( -30.30) >DroVir_CAF1 13672 108 - 1 GAGCCGCCUA---UUAGCAACAAGCUAAUACUCUGCUGUCAGCCAAUGUGCAGUAAUAAGUUUCAUGCCAGCUGCUGCAAAUAUUGGCCGCAAGCGAGCAUAAGCAACUCA (((..((.((---(((((.....)))))))(((.(((....((((((((((((((....((.....))....)))))))..)))))))....)))))).....))..))). ( -34.10) >DroSec_CAF1 13364 106 - 1 --CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUGUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU --..((((.(---((...)))..((.((.....((((((.(((.((((((..((.....))..)))))).)))))))))......))..)).)))).((....))...... ( -32.40) >DroSim_CAF1 13309 106 - 1 --CACGCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCUGUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCCGCAGCAAACAU --........---..........(((.(.....((((((.(((.((((((..((.....))..)))))).)))))))))......(((((....)).)))).)))...... ( -32.50) >DroYak_CAF1 11906 106 - 1 --CAUCCCAA---UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCACUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAACAGCAGCAAACAC --........---..........(((.(((...(((.(((((((((...)))))..(((((..(......)..)))))......)))).)))......))).)))...... ( -31.10) >DroMoj_CAF1 13422 111 - 1 GAGACUUCUGCGGCCAACAACAAGCUGAUCCACUGCAGCCAGCCACUGUGCAACAGUGUGUUCCAUGCCAGCUGCUGCAAGUAUUGGCCGCAGGCGAACGUCAGCAACUCC (((....((((((((((((......))....((((((((.((((((((.....))))).((.....))..)))))))).))).))))))))))((........))..))). ( -41.40) >consensus __CACGCCAA___UCGAAGAUAAGCUCCUGACAUGCAGCCAGCCAAUGUGUGGCAAGCGGUUUCACACGAGUUGCUGCAAAUAUUGGCCGCAGGCGAGCAGCAGCAAACAU .......................(((.(((...(((((.((((...((((.(((.....))).))))...)))))))))....((.((.....)).))))).)))...... (-22.36 = -21.28 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:22 2006