| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,745,962 – 23,746,082 |
| Length | 120 |
| Max. P | 0.964775 |
| Location | 23,745,962 – 23,746,082 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.50 |
| Mean single sequence MFE | -44.40 |
| Consensus MFE | -39.78 |
| Energy contribution | -40.22 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.90 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23745962 120 + 27905053 UGAACUCCUUGCGCAGCAGCUCCAGGCACUUCUGCAGAAACUGGUAGAUGGAGUUGCCCUUCUUCAUCAGCACGUUCCGCCGAUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAGA ....(((((..((((((.(((((.(((...((.((.(((....((.(((((((........))))))).))...))).)).))..))))))))(......)..))))..))..).)))). ( -44.30) >DroSec_CAF1 195683 120 + 1 UGAACUCCUUGCGCAGCAGCUCCAGGCACUUUUGCAGAAACUGGUAAAUGGAGUUGCCCUUCUUCAUCAGCACGUUGCGGCGAUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAGA ....(((((..((..(((((((((...(((..(......)..)))...))))))))).........(((((....(((((.((((((....)))))))).)))))))).))..).)))). ( -45.30) >DroSim_CAF1 195662 120 + 1 UGAACUCCUUGCGCAGCAGCUCCAGGCACUUUUGCAGAAACUGGUAAAUGGAGUUGCCCUUCUUCAUCAGCACGUUGCGCCGAUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAGA ....(((((..((..(((((((((...(((..(......)..)))...))))))))).........(((((....(((...((((((....))))))...)))))))).))..).)))). ( -43.00) >DroEre_CAF1 205562 120 + 1 UGAACUCCUUGCGCAGCAGCUCCAGGCACUUUUGCAAAAACUGGUAGAUGGAGUUGCCCUUCUUCAUCAGGGCACUGCGCCGGUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAGA ....(((((..((...(((((....(((....)))....(((((..(((((...((((((........))))))(((.(((...))))))..)))))))))))))))..))..).)))). ( -47.00) >DroYak_CAF1 202915 120 + 1 UGAACUCCUUGCGCAGCAGCUCCAGGCACUUUUGCAGAAACUGGUAGAUGGAGUUGCCCUUCUUCAUCAGGACGUUUCGUCGAUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAAA .....((((..((...(((((....(((....)))....(((((..(((((((........)))))))..((((...))))((((((....))))))))))))))))..))..).))).. ( -42.40) >consensus UGAACUCCUUGCGCAGCAGCUCCAGGCACUUUUGCAGAAACUGGUAGAUGGAGUUGCCCUUCUUCAUCAGCACGUUGCGCCGAUGGCCGGAGCCAUCCCAGUAGCUGAACGUGAUGGAGA ....(((((..((...(((((....(((....)))....(((((..(((((((........))))))).............((((((....))))))))))))))))..))..).)))). (-39.78 = -40.22 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:16 2006