Locus 8851

Sequence ID 3R_DroMel_CAF1
Location 23,745,642 – 23,745,802
Length 160
Max. P 0.958703
window14209 window14210

overview

Window 9

Location 23,745,642 – 23,745,762
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.17
Mean single sequence MFE -44.86
Consensus MFE -43.14
Energy contribution -43.46
Covariance contribution 0.32
Combinations/Pair 1.05
Mean z-score -1.21
Structure conservation index 0.96
SVM decision value 0.45
SVM RNA-class probability 0.741240
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23745642 120 + 27905053
UUUACUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGUAC
..((((((..(((..((((((((..(.....)..))).))))).((((((((((....)).))))))))(((..((((...((.((((.....))))))...)))).)))))))))))). ( -45.70)
>DroSec_CAF1 195363 120 + 1
UUUGCUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCAUACCAGGAGCGGAGAAGCAC
...(((((.(((((.((((((((..(.....)..))).))))).....)))))...)))))(((((.(.....).)))))....((((((.((.(((((.......))))))).)))))) ( -43.30)
>DroSim_CAF1 195342 120 + 1
UUUGCUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCAC
..((((((..(((..((((((((..(.....)..))).))))).((((((((((....)).))))))))(((..((((...((.((((.....))))))...)))).)))))))))))). ( -47.70)
>DroEre_CAF1 205242 120 + 1
UUUGCUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCCGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCAC
..(((((((.((((.((((((((..(.....)..))).)))))..(((((((((....)).)))))))((....))((...((.((((.....))))))...))))))....))))))). ( -45.20)
>DroYak_CAF1 202595 120 + 1
UUUGCUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGGUCGUAGGGUUCCCAUCGGCUGGCCGGGAAAAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCAC
..((((((..(((..((((((((..(.....)..))).))))).(((((((..(.....)..)))))))(((..((.((.....((((.....)))).....)).)))))))))))))). ( -42.40)
>consensus
UUUGCUCUUAUCCUUGUCCUUGAUGGUGUACUUGUCGUAGGACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCAC
..((((((..(((..((((((((..(.....)..))).))))).((((((((.(.....).))))))))(((..((((...((.((((.....))))))...)))).)))))))))))). (-43.14 = -43.46 +   0.32)

alignment

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secondary structure

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dotplot

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Window 0

Location 23,745,682 – 23,745,802
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -54.72
Consensus MFE -50.66
Energy contribution -50.38
Covariance contribution -0.28
Combinations/Pair 1.08
Mean z-score -1.56
Structure conservation index 0.93
SVM decision value 1.49
SVM RNA-class probability 0.958703
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23745682 120 + 27905053
GACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGUACCUUUCCGGCAUGGGACUCCUCCUUCUCCACGGAGGCGUCG
...(((((((((((....)).)))))))))...(((((((((..((((((.((.(((((.......))))))).)))))))))))))))....(((.(((((........))))).))). ( -53.70)
>DroSec_CAF1 195403 120 + 1
GACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCAUACCAGGAGCGGAGAAGCACCUUUCCCGCAUGGGACUCCUCCUUCUCGACGGAGGCGUCG
...(((((((((((....)).)))))))))...((.((((((..((((((.((.(((((.......))))))).)))))).))))))))....(((.(((((........))))).))). ( -51.40)
>DroSim_CAF1 195382 120 + 1
GACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCACCUUUCCCGCAUGGGACUCCUCCUUCUCGACGGAGGCGUCG
..((..((((((....((((((((..((.(((..((((...((.((((.....))))))...)))).))).))))))).))).))))))..))(((.(((((........))))).))). ( -55.90)
>DroEre_CAF1 205282 120 + 1
GACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCCGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCACCUUUCCCGCAUGGGACUCCUCCUUCUCCACGGAGGCGUCG
..(((.((((((..(.(((..(((((((((....))((((((..((((((.((.(((((.......))))))).)))))).))))))).))))))..))))..)).)))).)))...... ( -54.80)
>DroYak_CAF1 202635 120 + 1
GACUUGGUGGGGUCGUAGGGUUCCCAUCGGCUGGCCGGGAAAAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCACCUUUCCCGCAUGGGACUCCUCCUUCUCCACGGAGGCGUCG
..(((.((((((..(.(((..(((((((((....))((((((..((((((.((.(((((.......))))))).)))))).))))))).))))))..))).)..)))))).)))...... ( -57.80)
>consensus
GACUUGGUGGGAUCGUAGGGCUCCCAUCGGCUGGCUGGGAAGAUGUGCUUGUUGCGCUCGUACCAGGAGCGGAGGAGCACCUUUCCCGCAUGGGACUCCUCCUUCUCCACGGAGGCGUCG
...(((((((((.(.....).)))))))))...((.((((((..((((((.((.(((((.......))))))).)))))))))))).))....(((.(((((........))))).))). (-50.66 = -50.38 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:15 2006