| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,988,954 – 2,989,047 |
| Length | 93 |
| Max. P | 0.550689 |
| Location | 2,988,954 – 2,989,047 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 82.88 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.91 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550689 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2988954 93 - 27905053 ------GCUAUUUGCACUGACAUUUCGCAUUUCACAUUUCACUCUCACUCCUUUUUUGUAGAAAUGGCAAAUGGCAGAAAGCAAACAGC---GAACAAGCGA-- ------(((.(((((.(((.((((((.(((((((((....................))).))))))).))))).)))...))))).)))---..........-- ( -20.85) >DroVir_CAF1 29657 95 - 1 UGCCCGGCUAUUUACUUUGACAUU-------UCACAUUUCACUCUCACUCCUUUUAUGUAGAAAUGGCAA-CGGCAAAAAUCAAACAA-AACACACAAGAAAAC ((((..(((((((.((...((((.-------........................)))))))))))))..-.))))............-............... ( -12.51) >DroSim_CAF1 33405 93 - 1 ------GCUAUUUGCACUGACAUUUCGCAUUUCACAUUUCACUCUCACUCCUUUUUUGUAGAAAUGGCAAAUGGCAGAAAGCAAACAGC---GAAUAAGCGA-- ------(((.(((((.(((.((((((.(((((((((....................))).))))))).))))).)))...))))).)))---..........-- ( -20.85) >DroEre_CAF1 34906 86 - 1 ------GCUAUUUGCACUGACAUU-------UCACAUUUCACUCUCACUCCUUUUAUGUAGAAAUGGCAAAUGGCAGAAAGCAAACAGC---GAAUAAGCGA-- ------(((.(((((.(((.((((-------(..((((((((...............)).))))))..))))).)))...))))).)))---..........-- ( -20.76) >DroYak_CAF1 42992 86 - 1 ------GCUUUUUGCACUGACAUU-------UCACAUUUCACUCUCACUCCUUUUAUGUAGAAAUGGCAAAUGCAAGAAAACAAACAGC---GAAUAAGCGA-- ------(((((((((.....((((-------((((((..................)))).))))))((....)).............))---))).))))..-- ( -17.37) >DroAna_CAF1 27604 83 - 1 ------GCUAUUUGCACUGACAUU-------UCACAUUUCACUCUCACUCCUUUUAUGUAGAAAUGGCAAAUGGUCGAAAGCAAACAAC------UGAGCGA-- ------(((.(((((..(((((((-------(..((((((((...............)).))))))..)))).))))...)))))....------..)))..-- ( -15.56) >consensus ______GCUAUUUGCACUGACAUU_______UCACAUUUCACUCUCACUCCUUUUAUGUAGAAAUGGCAAAUGGCAGAAAGCAAACAGC___GAAUAAGCGA__ ......(((((((((..(((...........)))((((((((...............)).)))))))))))))))............................. (-12.02 = -12.91 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:33 2006