| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,744,108 – 23,744,221 |
| Length | 113 |
| Max. P | 0.633900 |
| Location | 23,744,108 – 23,744,221 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 73.92 |
| Mean single sequence MFE | -36.60 |
| Consensus MFE | -13.87 |
| Energy contribution | -12.40 |
| Covariance contribution | -1.46 |
| Combinations/Pair | 1.71 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23744108 113 + 27905053 UCUUCCAUUGGGCAACCCGUUGUGUUCGCGAAAUAGGACGACCACUUUCGCCUUGGCACAACUCUGUUCUUUUUUUCGGUGUACCAAAAGAGAGGUGGUGGUCUUGAAGUAAC .((((....((((.((((((((((((.((((((..((....))..))))))...))))))))......((((((((.((....)).))))))))).))).)))).)))).... ( -34.60) >DroSec_CAF1 193786 113 + 1 UCUUCCAUUGGGCAACCCGUUGUGUCUGCGAAAGAGGGCGACCACUUUCGCCUUGGCACAACUCUGCUCCUUUUUUCGGUGUACGAAAAGAGAGGUGGUGGUCUUAAAGUAAC ....(((..((....)).((((((((.(((((((.((....)).)))))))...)))))))).(..(..(((((((((.....)))))))))..)..))))............ ( -46.10) >DroSim_CAF1 192725 113 + 1 UCUUCCAUGGGGCAACCCGUUGUGUCUGCGAAAGAGGGCGACCACUUUCGCCUUGGCACAACUCUGCUCCUUUUUUCGGUGUACCAAAAGAGAGGUGGUGGUCUUAAAGUAAC ....(((.(((....)))((((((((.(((((((.((....)).)))))))...)))))))).(..(..(((((((.((....)))))))))..)..))))............ ( -46.60) >DroEre_CAF1 203696 113 + 1 UCUACCCUUGGGCAGCCGAUUGUGUCUUUUUAAGAGGGCAACAGCUUUCGCCUUAGUACAAUUCUGUUCUAUUUUCUGAUGUAACAAAAAGGAGGUCGUGGUGUUAAAGUAAC ......(((..(((.((((((...(((((((..((((((....))))))....(((.(((....))).)))..............))))))).))))).).)))..))).... ( -24.80) >DroYak_CAF1 200825 113 + 1 UCUACCCUUGGGCAGCCGAGAGUGUCUCCGAAAGAGGGCGACGGCUUUCGCCUUGGUACAACUCUGAUUUAUUUUUCGAUGUAUUAACAAGGAGGUAGUGGUGUUAAAGUACC .(((((((((((((((((....((((..(....)..)))).)))))...)))((((((((..((.((........))))))))))))))))..))))).((((......)))) ( -34.30) >DroAna_CAF1 203052 110 + 1 UUUCCCAAAAGGGAAU---UUGUGCUUUCGGAAGAGUGCAAGUGCCUUAGCCUUUCGGCAGCCUUUUUUUCGAUUUCGAUGAAUUAGAAAAGAUGUGGCGCUCUUAAAAAAUA .(((((....))))).---...(((.(((....))).)))((((((...(((....))).((.(((((((..((((....))))..))))))).))))))))........... ( -33.20) >consensus UCUUCCAUUGGGCAACCCGUUGUGUCUGCGAAAGAGGGCGACCACUUUCGCCUUGGCACAACUCUGUUCUUUUUUUCGAUGUACCAAAAAAGAGGUGGUGGUCUUAAAGUAAC .........((....)).....(((((.(....).)))))((((((...(((((..........(((.((.......)).)))........)))))))))))........... (-13.87 = -12.40 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:12 2006