Locus 8848

Sequence ID 3R_DroMel_CAF1
Location 23,742,051 – 23,742,164
Length 113
Max. P 0.678478
window14206

overview

Window 6

Location 23,742,051 – 23,742,164
Length 113
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 73.88
Mean single sequence MFE -45.35
Consensus MFE -25.62
Energy contribution -27.73
Covariance contribution 2.11
Combinations/Pair 1.31
Mean z-score -1.53
Structure conservation index 0.56
SVM decision value 0.30
SVM RNA-class probability 0.678478
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23742051 113 + 27905053
CACGGGCACGGCGGCCAGCUCCCGCCCACAACGUUCGUUGUCCGGGAAGCGGCGCUUAGGCGCUGCAAGGCACGUACUGCCCAAUUCGGCCUGUUCCAUGCUUGGGCUGCUCC
...(((((..((((((...(((((...(((((....))))).))))).(((((((....)))))))..))).)))..)))))....(((((((.........))))))).... ( -53.70)
>DroPse_CAF1 210781 99 + 1
CAUGGGUGCGGCAUC---UUUCAGUGC---AAUCUCGCUGGCCGAGAAGCGCCGCUUUUGCGCUGCAACAAAAGCGCUGCCCACAUCGGCGUUAUCCAUUCUA--------CC
.(((((((((((.((---((((((((.---.....))))))..))))...)))))....(((((........))))).(((......)))...))))))....--------.. ( -33.90)
>DroSim_CAF1 190683 113 + 1
CACGAGCACGGCGACCGACUCCCUCCCACAACGCUCGUUGUCCGGGAAGCGGCGCUUAGGCGCUGCAAGGCACGCACUGCCCAAUUCGGCCUGUUCCAUGAUUGGGCUGCUCC
...(((((..(((.((.......(((((((((....)))))..)))).(((((((....)))))))..))..)))...((((((((.((......))..))))))))))))). ( -48.70)
>DroEre_CAF1 201496 113 + 1
UGGGGGCGUGGCGGCCUGCUCCCGUCCACAACACUCGCUGGCCGGGAAGCGGCGCUUAUGCGCUGCAAGGCACACACUGCCCACUUCAGCCUGUUCCAUGCUUGGGCUGCUCC
..((((((((...((((..(((((.((((.......).))).))))).(((((((....))))))).))))...))).(((((....(((.((...)).)))))))).))))) ( -52.80)
>DroYak_CAF1 198606 113 + 1
CUGGGGCGUGGCGGCUGACUCCCGCCCACAACGCUCGUUGGCCGGGAAGCGGCGCUUAGGCGCUGCAAGGCACGCACUGACCACUUCGGCCUGUUCCAUGCUUGGGCUGCUCC
..((((((((((((.......))).))))...(((((..(((..(((((((((((....))))))).((((.((............)))))).))))..)))))))).))))) ( -49.10)
>DroPer_CAF1 206663 99 + 1
CAUGGGUGCGGCAUC---UUUCAGUGC---AAUCUCGCUGGCCGAGAAGCGCCGCUUUUGCGCUGCAACAAAAGCGCUGCCCACAUCGGCGUUAUCCAUUCUA--------CC
.(((((((((((.((---((((((((.---.....))))))..))))...)))))....(((((........))))).(((......)))...))))))....--------.. ( -33.90)
>consensus
CACGGGCGCGGCGGCC__CUCCCGCCCACAACGCUCGCUGGCCGGGAAGCGGCGCUUAGGCGCUGCAAGGCACGCACUGCCCACUUCGGCCUGUUCCAUGCUUGGGCUGCUCC
...(((((..((((((.................((((.....))))..(((((((....)))))))..))).)))..)))))....(((((((.........))))))).... (-25.62 = -27.73 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:10 2006