Locus 8847

Sequence ID 3R_DroMel_CAF1
Location 23,738,059 – 23,738,151
Length 92
Max. P 0.629805
window14205

overview

Window 5

Location 23,738,059 – 23,738,151
Length 92
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -27.52
Consensus MFE -14.99
Energy contribution -15.30
Covariance contribution 0.31
Combinations/Pair 1.11
Mean z-score -2.03
Structure conservation index 0.54
SVM decision value 0.20
SVM RNA-class probability 0.629805
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23738059 92 + 27905053
-AUAAAU--------UGCUUAAUAUUUU-----------CUAGUACAUCUAGUUAGUUCCAGCACUUUAGUGAAAAGCGGGCCUUGCCUUUUGUGCUGGGAGUUUUGGGAAA
-......--------..(((((...(((-----------((((((((....((.((..((..(((....)))......))..)).))....)))))))))))..)))))... ( -22.50)
>DroSec_CAF1 187785 92 + 1
-AUAGAU--------UCCAUAAUAUUUU-----------CUAGUACAUCUAGUUAGUUCCAGCGCUUUGGUGAAAAGCGGGCCUUGCCUUUUGUGCUGGGAGUUUCGGGAAA
-.....(--------(((.......(((-----------((((((((....((.((..((...(((((.....)))))))..)).))....))))))))))).....)))). ( -26.30)
>DroSim_CAF1 187043 92 + 1
-AUAGAU--------UCUAUAAUAUUUU-----------CUAGUACAUCUAGUUAGUUCCAGCGCUUUGGUGAAAAGCGGGCCUUGACUUUUGUGCUGGGAGUUUUGGGAAA
-.....(--------(((.......(((-----------((((((((...((((((..((..((((((.....))))))))..))))))..))))))))))).....)))). ( -28.40)
>DroEre_CAF1 197325 111 + 1
GUUAAAUAUCGAGGUACUUCGAA-UUUUCCCUAAGGUAACUGCUACAUCUAGUGAGAUCCGGAACUUUUGUGAAAAGUGGGCCUUGCUUUUUGUGCUGGCAGUUUUGGGAAA
........(((((....))))).-.((((((......(((((((((((..((..((..((...(((((.....)))))))..))..))....))).))))))))..)))))) ( -32.90)
>consensus
_AUAAAU________UCCAUAAUAUUUU___________CUAGUACAUCUAGUUAGUUCCAGCACUUUGGUGAAAAGCGGGCCUUGCCUUUUGUGCUGGGAGUUUUGGGAAA
.......................................((((((((....((.((..((...(((((.....)))))))..)).))....))))))))............. (-14.99 = -15.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:09 2006