Locus 8846

Sequence ID 3R_DroMel_CAF1
Location 23,727,656 – 23,727,750
Length 94
Max. P 0.548702
window14204

overview

Window 4

Location 23,727,656 – 23,727,750
Length 94
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.95
Mean single sequence MFE -24.93
Consensus MFE -13.38
Energy contribution -15.33
Covariance contribution 1.94
Combinations/Pair 1.05
Mean z-score -2.08
Structure conservation index 0.54
SVM decision value 0.03
SVM RNA-class probability 0.548702
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23727656 94 - 27905053
AUUGCUGUGAGAGGGCCAAG--------------ACCGAAGGGCCAAGAAUCGGGGCAAUGAGCAUUGCCUGGCGCAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(..((((((...((((...--------------.......)))).....)).(((((((....))))))).((((.......))))....))))..).......... ( -25.30)
>DroSec_CAF1 175309 94 - 1
AUUGCUGUGAGAGGGCCAAG--------------ACCGAAGGGCCAAGAAUCGGGGCAAUGAGCAUUGCCUGGCACAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(..((((....(.((((.(--------------.((....)).)......(.(((((((....))))))).).......)).)).)....))))..).......... ( -22.80)
>DroSim_CAF1 175133 94 - 1
AUUGCUGUGAGAGGGCCAAG--------------ACCGAAGGGCCAAGAAUCGGGGCAAUGAGCAUUGCCUGGCGCAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(..((((((...((((...--------------.......)))).....)).(((((((....))))))).((((.......))))....))))..).......... ( -25.30)
>DroWil_CAF1 200581 87 - 1
AUUGCUCUAAG--CGUCAGG--------------ACC-----UCCAAGGAUAGCAUCAUUAUGAGUAGCCUGGCGCAUAAUGAGCGUGAAAAUAGUGCAAAUAUGAAA
...((((...(--(((((((--------------..(-----((....(((...))).....)))...)))))))).....))))....................... ( -23.10)
>DroYak_CAF1 183421 108 - 1
AUUGCUGUGAGAGGGCCAAAACCAAGGGGCCAGGACCGAAGGGCCAACAAUCGGGGCAAUGAGCAUUGCCUGGCGCAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(..((((((..(((((..........)))).((.((....))))..)..)).(((((((....))))))).((((.......))))....))))..).......... ( -31.80)
>DroAna_CAF1 181263 86 - 1
AUUGCUGUAAGAGGGCCACU----------------------GCCACAAUGAGGGGCAAUGAGCGUUGCCUGGGGCAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(..((((....(.((((.(----------------------(((.(.....)(((((((....)))))))..))))...)).)).)....))))..).......... ( -21.30)
>consensus
AUUGCUGUGAGAGGGCCAAG______________ACCGAAGGGCCAAGAAUCGGGGCAAUGAGCAUUGCCUGGCGCAUAAUGAGCGUGAAAAUAGUGAAAAUAUGAAA
.(((((((.....((((........................))))........(((((((....))))))).((((.......))))....))))))).......... (-13.38 = -15.33 +   1.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:08 2006