| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,713,653 – 23,713,748 |
| Length | 95 |
| Max. P | 0.609212 |
| Location | 23,713,653 – 23,713,748 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -18.25 |
| Energy contribution | -18.50 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23713653 95 + 27905053 ----CGCCUAG-------------UGUGUGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA-AAUCAUUAAUAUGG-CGGCUCUAAUGUCGAGGAUAUGUAAAUGC-AGG ----..(((..-------------...((((((.(((((.(((....)))))))))))))).....-...((((.(((((.-((((......))))....))))).)))).-))) ( -24.30) >DroGri_CAF1 207121 101 + 1 AUGCCGCAUG--------------AGUGAGUGAACUACGGCGUGAUAACGCAUUAUUAUACUAUAAAAAUCAUUAAUAUAGCCCGCUCUAAUGCCGCAAAUAUGUAAAUGCCAGU .(((.((((.--------------...(((((..(((..((((....)))).((((......))))............)))..)))))..)))).)))................. ( -21.80) >DroEre_CAF1 170741 106 + 1 ----CGCCUGGCCAU--CAGUUCGUGAGUGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA-AAUCAUUAAUAUGG-CGGCUCUAAUGCCGAAGAUAUGUAAAUGC-AGG ----..(((((((((--..(((.((((..((((((((((.(((....)))))))))).))).....-..)))).)))))))-)(((......)))...............)-))) ( -32.20) >DroWil_CAF1 183965 94 + 1 ----CUUAUG--------------AGUGGGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA-AAUCAUUAAUAUGG-CGGCUCAAAUGGCGGAAAUAUGUAAAUGC-AUG ----......--------------.((((((((((((((.(((....)))))))))).))))....-...((((.(((((.-(.(((.....))).)...))))).)))))-)). ( -22.90) >DroYak_CAF1 168992 108 + 1 ----CGCCUGGCCAUAUAAGCCCACGAGUGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA-AAUCAUUAAUAUGG-CGGCUCUAAUGUCGAGGAUAUGUAAAUGC-AGG ----..(((((((((((((.......(((((((.(((((.(((....)))))))))))))))....-.....)).))))))-)(((......)))...............)-))) ( -31.49) >DroAna_CAF1 167878 94 + 1 ----CGC-UGG-------------CGAGAGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA-AAUCAUUAAUAUGG-CGGCUUUAAUGUCGCGGAUAUGUAAAUGC-AGG ----..(-((.-------------....(((((((((((.(((....)))))))))).))))....-...((((.((((((-((((......)))))...))))).)))))-)). ( -27.20) >consensus ____CGCCUGG_____________AGAGUGUGAGUGACGGCGUGAUAACGCGUUAUUACACUAUAA_AAUCAUUAAUAUGG_CGGCUCUAAUGUCGAAGAUAUGUAAAUGC_AGG .............................((((((((((.(((....)))))))))).))).........((((.(((((..((((......))))....))))).))))..... (-18.25 = -18.50 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:06 2006