Locus 8841

Sequence ID 3R_DroMel_CAF1
Location 23,678,409 – 23,678,499
Length 90
Max. P 0.940971
window14194

overview

Window 4

Location 23,678,409 – 23,678,499
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -23.78
Consensus MFE -19.80
Energy contribution -20.40
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.82
Structure conservation index 0.83
SVM decision value 1.31
SVM RNA-class probability 0.940971
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23678409 90 - 27905053
GAUUUGCAGUAGAUAAUCUAAUCUGCUGUUCGCAACUGUUCAUAUAUGCAUUUAGAGGCGUAUGCAAAACCGUUUUGCCAUUGCGGCAGU
.....(((((((((......)))))))))((((((.((.....((((((........))))))(((((.....))))))))))))).... ( -24.50)
>DroSec_CAF1 140063 90 - 1
GAUUUGCAGUAGAUAAUCUAAUCUGCUGUUCGCAACUGUUCAUAUAUGCAUUUAGAGGCGUAUGCAAAACUGUUUUGCCAUUGCGGCAGU
.....(((((((((......)))))))))((((((.((.....((((((........))))))(((((.....))))))))))))).... ( -24.50)
>DroSim_CAF1 139930 90 - 1
GAUUUGCAGUAGAUAAUCUAAUCUGCUGUUCGCAACUGUUCAUAUAUGCAUUUAGAGGCGUAUGCAAAACUGUUUUGCCAUUGCGGCAGU
.....(((((((((......)))))))))((((((.((.....((((((........))))))(((((.....))))))))))))).... ( -24.50)
>DroEre_CAF1 146909 89 - 1
UAUUGGCAGCAGAUAAUCUAAUCUGCUGUUCGCAACUGUUCAUAUAUGCAUUUAGAGGAGUAUGCAAAACUGUUUUGCCG-UGCGGCAGC
....((((((((((......)))))))))).((((((.(((.((........))))).))).))).........(((((.-...))))). ( -26.60)
>DroYak_CAF1 146541 90 - 1
UAUUUGCAAUUGAUAAUCUAAUCUGCUGUUUGCAACUGUUCAUAUAUGCAUUUAGAGUAGUAUGCAAAACUGUUAUGCCAUUGUGGCAGC
..((((((((((....(((((..((((((..((....))....))).))).))))).)))).)))))).(((((((......))))))). ( -18.80)
>consensus
GAUUUGCAGUAGAUAAUCUAAUCUGCUGUUCGCAACUGUUCAUAUAUGCAUUUAGAGGCGUAUGCAAAACUGUUUUGCCAUUGCGGCAGU
.....(((((((((......)))))))))..(((((.(((..(((((((........)))))))...))).))).((((.....)))))) (-19.80 = -20.40 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:00 2006